hack: add python job to see if there are any alerts

Set `shell: bash` by default on all workflows

.github/pull_request_template.md

@@ -1,4 +1,4 @@
-
+<!-- For GitHub staff: Remember that this is a public repository. -->
 
 ### Risk assessment
 

.github/workflows/__all-platform-bundle.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   all-platform-bundle:
     strategy:
@@ -70,7 +73,6 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__analyze-ref-input.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   analyze-ref-input:
     strategy:
@@ -74,7 +77,6 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:

.github/workflows/__autobuild-action.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   autobuild-action:
     strategy:
@@ -67,7 +70,6 @@ jobs:
           CORECLR_PROFILER_PATH_64: ''
       - uses: ./../action/analyze
       - name: Check database
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d csharp ]]; then

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Java to install
         required: false
         default: '17'
+defaults:
+  run:
+    shell: bash
 jobs:
   autobuild-direct-tracing-with-working-dir:
     strategy:
@@ -70,7 +73,6 @@ jobs:
           java-version: ${{ inputs.java-version || '17' }}
           distribution: temurin
       - name: Test setup
-        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -82,7 +84,6 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check that indirect tracing is disabled
-        shell: bash
         run: |
           if [[ ! -z "${CODEQL_RUNNER}" ]]; then
             echo "Expected indirect tracing to be disabled, but the" \

.github/workflows/__autobuild-direct-tracing.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Java to install
         required: false
         default: '17'
+defaults:
+  run:
+    shell: bash
 jobs:
   autobuild-direct-tracing:
     strategy:
@@ -70,7 +73,6 @@ jobs:
           java-version: ${{ inputs.java-version || '17' }}
           distribution: temurin
       - name: Set up Java test repo configuration
-        shell: bash
         run: |
           mv * .github ../action/tests/multi-language-repo/
           mv ../action/tests/multi-language-repo/.github/workflows .github
@@ -85,7 +87,6 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - name: Check that indirect tracing is disabled
-        shell: bash
         run: |
           if [[ ! -z "${CODEQL_RUNNER}" ]]; then
             echo "Expected indirect tracing to be disabled, but the" \

.github/workflows/__build-mode-autobuild.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   build-mode-autobuild:
     strategy:

.github/workflows/__build-mode-manual.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   build-mode-manual:
     strategy:
@@ -81,7 +84,6 @@ jobs:
           fi
 
       - name: Build code
-        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze

.github/workflows/__build-mode-none.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   build-mode-none:
     strategy:

.github/workflows/__build-mode-rollback.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   build-mode-rollback:
     strategy:

.github/workflows/__bundle-toolcache.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   bundle-toolcache:
     strategy:

.github/workflows/__bundle-zstd.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   bundle-zstd:
     strategy:

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   cleanup-db-cluster-dir:
     strategy:

.github/workflows/__config-export.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   config-export:
     strategy:

.github/workflows/__config-input.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   config-input:
     strategy:

.github/workflows/__cpp-deptrace-disabled.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   cpp-deptrace-disabled:
     strategy:
@@ -53,7 +56,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -65,8 +67,7 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-      - shell: bash
-        run: |
+      - run: |
           if ls /usr/bin/errno; then
             echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
             exit 1

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
@@ -51,7 +54,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -63,8 +65,7 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - shell: bash
-        run: |
+      - run: |
           if ! ls /usr/bin/errno; then
             echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
           else

.github/workflows/__cpp-deptrace-enabled.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   cpp-deptrace-enabled:
     strategy:
@@ -53,7 +56,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -65,8 +67,7 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - shell: bash
-        run: |
+      - run: |
           if ! ls /usr/bin/errno; then
             echo "Did not autoinstall errno"
             exit 1

.github/workflows/__diagnostics-export.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   diagnostics-export:
     strategy:
@@ -64,7 +67,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Add test diagnostics
-        shell: bash
         env:
           CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
         run: |

.github/workflows/__export-file-baseline-information.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   export-file-baseline-information:
     strategy:
@@ -73,7 +76,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -85,7 +87,6 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"

.github/workflows/__extractor-ram-threads.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   extractor-ram-threads:
     strategy:
@@ -54,7 +57,6 @@ jobs:
           ram: 230
           threads: 1
       - name: Assert Results
-        shell: bash
         run: |
           if [ "${CODEQL_RAM}" != "230" ]; then
             echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"

.github/workflows/__go-custom-queries.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-custom-queries:
     strategy:
@@ -71,7 +74,6 @@ jobs:
           config-file: ./.github/codeql/custom-queries.yml
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
@@ -72,7 +75,6 @@ jobs:
         with:
           go-version: '1.20'
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-indirect-tracing-workaround-no-file-program:
     strategy:
@@ -73,7 +76,6 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-indirect-tracing-workaround:
     strategy:
@@ -68,11 +71,9 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
             echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
               "CODEQL_ACTION_GO_BINARY environment variable is not set."

.github/workflows/__go-tracing-autobuilder.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-tracing-autobuilder:
     strategy:
@@ -99,8 +102,7 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
             echo "Expected the Go autobuilder to be run, but the" \
               "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-tracing-custom-build-steps:
     strategy:
@@ -98,11 +101,9 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           # Once we start running Bash 4.2 in all environments, we can replace the
           # `! -z` flag with the more elegant `-v` which confirms that the variable
           # is actually unset and not potentially set to a blank value.

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   go-tracing-legacy-workflow:
     strategy:
@@ -98,8 +101,7 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d go ]]; then
             echo "Did not find a Go database"

.github/workflows/__init-with-registries.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   init-with-registries:
     strategy:
@@ -78,7 +81,6 @@ jobs:
               token: "${{ secrets.GITHUB_TOKEN }}"
 
       - name: Verify packages installed
-        shell: bash
         run: |
           PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
           CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
@@ -100,7 +102,6 @@ jobs:
           fi
 
       - name: Verify qlconfig.yml file was created
-        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
@@ -115,7 +116,6 @@ jobs:
       - name: Verify contents of qlconfig.yml
     # yq is not available on windows
         if: runner.os != 'Windows'
-        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'

.github/workflows/__javascript-source-root.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   javascript-source-root:
     strategy:
@@ -53,7 +56,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Move codeql-action
-        shell: bash
         run: |
           mkdir ../new-source-root
           mv * ../new-source-root
@@ -66,7 +68,6 @@ jobs:
         with:
           skip-queries: true
       - name: Assert database exists
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d javascript ]]; then

.github/workflows/__job-run-uuid-sarif.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   job-run-uuid-sarif:
     strategy:
@@ -63,7 +66,6 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)

.github/workflows/__language-aliases.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   language-aliases:
     strategy:

.github/workflows/__multi-language-autodetect.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   multi-language-autodetect:
     strategy:
@@ -94,7 +97,6 @@ jobs:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
       - name: Use Xcode 16
-        shell: bash
         if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
         run: sudo xcode-select -s "/Applications/Xcode_16.app"
 
@@ -107,7 +109,6 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - name: Build code
-        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze
@@ -116,7 +117,6 @@ jobs:
           upload-database: false
 
       - name: Check language autodetect for all languages excluding Swift
-        shell: bash
         run: |
           CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
           if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -156,7 +156,6 @@ jobs:
 
       - name: Check language autodetect for Swift on macOS
         if: runner.os == 'macOS'
-        shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
           if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -164,4 +163,5 @@ jobs:
             exit 1
           fi
     env:
+      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   overlay-init-fallback:
     strategy:
@@ -61,7 +64,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases/actions"
           if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
@@ -93,7 +96,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -109,7 +111,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-inputs-js.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   packaging-config-inputs-js:
     strategy:
@@ -93,7 +96,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -109,7 +111,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-js.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   packaging-config-js:
     strategy:
@@ -92,7 +95,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -108,7 +110,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-inputs-js.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   packaging-inputs-js:
     strategy:
@@ -93,7 +96,6 @@ jobs:
           packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -108,7 +110,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__quality-queries.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   quality-queries:
     strategy:
@@ -32,16 +35,58 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning,code-quality
           - os: macos-latest
             version: linked
+            analysis-kinds: code-scanning
+          - os: macos-latest
+            version: linked
+            analysis-kinds: code-quality
+          - os: macos-latest
+            version: linked
+            analysis-kinds: code-scanning,code-quality
           - os: windows-latest
             version: linked
+            analysis-kinds: code-scanning
+          - os: windows-latest
+            version: linked
+            analysis-kinds: code-quality
+          - os: windows-latest
+            version: linked
+            analysis-kinds: code-scanning,code-quality
           - os: ubuntu-latest
             version: nightly-latest
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
           - os: macos-latest
             version: nightly-latest
+            analysis-kinds: code-scanning
+          - os: macos-latest
+            version: nightly-latest
+            analysis-kinds: code-quality
+          - os: macos-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
           - os: windows-latest
             version: nightly-latest
+            analysis-kinds: code-scanning
+          - os: windows-latest
+            version: nightly-latest
+            analysis-kinds: code-quality
+          - os: windows-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
     name: Quality queries input
     permissions:
       contents: read
@@ -61,25 +106,30 @@ jobs:
       - uses: ./../action/init
         with:
           languages: javascript
-          quality-queries: code-quality
+          analysis-kinds: ${{ matrix.analysis-kinds }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload security SARIF
+        if: contains(matrix.analysis-kinds, 'code-scanning')
         uses: actions/upload-artifact@v4
         with:
-          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          name: |
+            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Upload quality SARIF
+        if: contains(matrix.analysis-kinds, 'code-quality')
         uses: actions/upload-artifact@v4
         with:
-          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.quality.sarif.json
+          name: |
+            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
           path: ${{ runner.temp }}/results/javascript.quality.sarif
           retention-days: 7
       - name: Check quality query does not appear in security SARIF
+        if: contains(matrix.analysis-kinds, 'code-scanning')
         uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
@@ -87,6 +137,7 @@ jobs:
         with:
           script: ${{ env.CHECK_SCRIPT }}
       - name: Check quality query appears in quality SARIF
+        if: contains(matrix.analysis-kinds, 'code-quality')
         uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif

.github/workflows/__remote-config.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   remote-config:
     strategy:
@@ -72,7 +75,6 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__resolve-environment-action.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   resolve-environment-action:
     strategy:

.github/workflows/__rubocop-multi-language.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   rubocop-multi-language:
     strategy:
@@ -53,13 +56,10 @@ jobs:
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration
-        shell: bash
         run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
       - name: Install dependencies
-        shell: bash
         run: bundle install
       - name: RuboCop run
-        shell: bash
         run: |
           bash -c "
             bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif

.github/workflows/__ruby.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   ruby:
     strategy:
@@ -67,7 +70,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
           if [[ ! -d "$RUBY_DB" ]]; then

.github/workflows/__rust.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   rust:
     strategy:
@@ -65,7 +68,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
           if [[ ! -d "$RUST_DB" ]]; then

.github/workflows/__split-workflow.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   split-workflow:
     strategy:
@@ -80,7 +83,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -89,7 +91,6 @@ jobs:
           upload-database: false
 
       - name: Assert No Results
-        shell: bash
         run: |
           if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
             echo "Expected results directory to be empty after skipping query execution!"
@@ -100,7 +101,6 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__start-proxy.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   start-proxy:
     strategy:

.github/workflows/__submit-sarif-failure.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   submit-sarif-failure:
     strategy:

.github/workflows/__swift-autobuild.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   swift-autobuild:
     strategy:
@@ -55,7 +58,6 @@ jobs:
           build-mode: autobuild
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check working directory
-        shell: bash
         run: pwd
       - uses: ./../action/autobuild
         timeout-minutes: 30
@@ -64,7 +66,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__swift-custom-build.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   swift-custom-build:
     strategy:
@@ -68,7 +71,6 @@ jobs:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
       - name: Use Xcode 16
-        shell: bash
         if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
         run: sudo xcode-select -s "/Applications/Xcode_16.app"
       - uses: ./../action/init
@@ -77,17 +79,14 @@ jobs:
           languages: swift
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check working directory
-        shell: bash
         run: pwd
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__test-autobuild-working-dir.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   test-autobuild-working-dir:
     strategy:
@@ -49,7 +52,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -64,7 +66,6 @@ jobs:
           working-directory: autobuild-dir
       - uses: ./../action/analyze
       - name: Check database
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d java ]]; then

.github/workflows/__test-local-codeql.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   test-local-codeql:
     strategy:
@@ -64,7 +67,6 @@ jobs:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
       - name: Fetch a CodeQL bundle
-        shell: bash
         env:
           CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
         run: |
@@ -76,7 +78,6 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ./codeql-bundle-linux64.tar.zst
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__test-proxy.yml

@@ -24,6 +24,9 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   test-proxy:
     strategy:

.github/workflows/__unset-environment.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   unset-environment:
     strategy:
@@ -73,14 +76,12 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
-      - shell: bash
-        run: |
+      - run: |
           CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
           if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
             echo "::error::Did not create a database for CPP, or created it in the wrong location." \

.github/workflows/__upload-quality-sarif.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   upload-quality-sarif:
     strategy:
@@ -73,9 +76,8 @@ jobs:
           languages: cpp,csharp,java,javascript,python
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
-          quality-queries: code-quality
+          analysis-kinds: code-scanning,code-quality
       - name: Build code
-        shell: bash
         run: ./build.sh
   # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze

.github/workflows/__upload-ref-sha-input.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   upload-ref-sha-input:
     strategy:
@@ -74,7 +77,6 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
-        shell: bash
         run: ./build.sh
   # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze

.github/workflows/__with-checkout-path.yml

@@ -34,6 +34,9 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
 jobs:
   with-checkout-path:
     strategy:
@@ -68,7 +71,6 @@ jobs:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
       - name: Delete original checkout
-        shell: bash
         run: |
           # delete the original checkout so we don't accidentally use it.
           # Actions does not support deleting the current working directory, so we
@@ -89,7 +91,6 @@ jobs:
           source-root: x/y/z/some-path/tests/multi-language-repo
 
       - name: Build code
-        shell: bash
         working-directory: x/y/z/some-path/tests/multi-language-repo
         run: |
           ./build.sh
@@ -101,7 +102,6 @@ jobs:
           sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
 
       - name: Verify SARIF after upload
-        shell: bash
         run: |
           EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
           EXPECTED_REF="v1.1.0"

.github/workflows/check-expected-release-files.yml

@@ -9,6 +9,10 @@ on:
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   check-expected-release-files:
     runs-on: ubuntu-latest

.github/workflows/codeql.yml

@@ -13,6 +13,10 @@ on:
     - cron: '30 1 * * 0'
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 env:
   CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
 
@@ -95,7 +99,10 @@ jobs:
         tools: ${{ matrix.tools }}
     # confirm steps.init.outputs.codeql-path points to the codeql binary
     - name: Print CodeQL Version
-      run: ${{steps.init.outputs.codeql-path}} version --format=json
+      run: >
+        "$CODEQL" version --format=json
+      env:
+        CODEQL: ${{steps.init.outputs.codeql-path}}
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
@@ -124,3 +131,26 @@ jobs:
       uses: ./analyze
       with:
         category: "/language:actions"
+
+  analyze-python:
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+
+    permissions:
+      contents: read
+      security-events: write
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v5
+      - name: Initialize CodeQL
+        uses: ./init
+        with:
+          languages: python
+          config-file: ./.github/codeql/codeql-actions-config.yml
+      - name: Perform CodeQL Analysis
+        uses: ./analyze
+        with:
+          category: "/language:python"

.github/workflows/codescanning-config-cli.yml

@@ -22,6 +22,10 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   code-scanning-config-tests:
     continue-on-error: true

.github/workflows/debug-artifacts-failure-safe.yml

@@ -17,6 +17,11 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
+
+defaults:
+  run:
+    shell: bash
+
 jobs:
   upload-artifacts:
     strategy:
@@ -55,7 +60,6 @@ jobs:
           debug-artifact-name: my-debug-artifacts
           debug-database-name: my-db
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
@@ -75,7 +79,6 @@ jobs:
       - name: Download all artifacts
         uses: actions/download-artifact@v5
       - name: Check expected artifacts exist
-        shell: bash
         run: |
           LANGUAGES="cpp csharp go java javascript python"
           for version in $VERSIONS; do

.github/workflows/debug-artifacts-safe.yml

@@ -16,6 +16,11 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
+
+defaults:
+  run:
+    shell: bash
+
 jobs:
   upload-artifacts:
     strategy:
@@ -54,7 +59,6 @@ jobs:
           # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
           languages: cpp,csharp,go,java,javascript,python,ruby
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
@@ -69,7 +73,6 @@ jobs:
       - name: Download all artifacts
         uses: actions/download-artifact@v5
       - name: Check expected artifacts exist
-        shell: bash
         run: |
           VERSIONS="stable-v2.20.3 default linked nightly-latest"
           LANGUAGES="cpp csharp go java javascript python"

.github/workflows/post-release-mergeback.yml

@@ -18,6 +18,10 @@ on:
     branches:
       - releases/v*
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   merge-back:
     runs-on: ubuntu-latest

.github/workflows/pr-checks.yml

@@ -8,6 +8,10 @@ on:
     types: [opened, synchronize, reopened, ready_for_review]
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   unit-tests:
     name: Unit Tests
@@ -22,6 +26,10 @@ jobs:
     timeout-minutes: 45
 
     steps:
+      - name: Prepare git (Windows)
+        if: runner.os == 'Windows'
+        run: git config --global core.autocrlf false
+
       - uses: actions/checkout@v5
       
       - name: Set up Node.js

.github/workflows/prepare-release.yml

@@ -22,6 +22,10 @@ on:
     paths:
       - .github/workflows/prepare-release.yml
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   prepare:
     name: "Prepare release"

.github/workflows/publish-immutable-action.yml

@@ -4,6 +4,10 @@ on:
   release:
     types: [published]
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   publish:
     runs-on: ubuntu-latest

.github/workflows/python312-windows.yml

@@ -12,6 +12,10 @@ on:
     - cron: '0 0 * * 1'
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   test-setup-python-scripts:
     env:

.github/workflows/query-filters.yml

@@ -15,6 +15,10 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   query-filters:
     name: Query Filters Tests

.github/workflows/rebuild.yml

@@ -5,6 +5,10 @@ on:
     types: [labeled]
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   rebuild:
     name: Rebuild Action

.github/workflows/rollback-release.yml

@@ -14,6 +14,10 @@ on:
       - .github/workflows/rollback-release.yml
       - .github/actions/prepare-mergeback-branch/**
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   prepare:
     name: "Prepare release"
@@ -53,7 +57,6 @@ jobs:
 
       - name: Create tag for testing
         if: github.event_name != 'workflow_dispatch'
-        shell: bash
         run: git tag v0.0.0
 
       # We start by preparing the mergeback branch, mainly so that we have the updated changelog
@@ -96,7 +99,6 @@ jobs:
           echo "::endgroup::"
 
       - name: Create tags
-        shell: bash
         env:
           # We usually expect to checkout `inputs.rollback-tag` (required for `workflow_dispatch`),
           # but use `v0.0.0` for testing.
@@ -111,7 +113,6 @@ jobs:
       - name: Push tags
         # skip when testing
         if: github.event_name == 'workflow_dispatch'
-        shell: bash
         env:
           RELEASE_TAG: ${{ needs.prepare.outputs.version }}
           MAJOR_VERSION_TAG: ${{ needs.prepare.outputs.major_version }}
@@ -160,7 +161,6 @@ jobs:
           echo "Created draft rollback release at $RELEASE_URL" >> $GITHUB_STEP_SUMMARY
 
       - name: Update changelog
-        shell: bash
         env:
           NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
           NEW_BRANCH: "${{ steps.mergeback-branch.outputs.new-branch }}"

.github/workflows/script/update-required-checks.sh

@@ -1,6 +1,5 @@
 #!/usr/bin/env bash
 # Update the required checks based on the current branch.
-# Typically, this will be main.
 
 SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
 REPO_DIR="$(dirname "$SCRIPT_DIR")"

.github/workflows/test-codeql-bundle-all.yml

@@ -16,6 +16,9 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   test-codeql-bundle-all:
     strategy:
@@ -46,7 +49,6 @@ jobs:
         languages: cpp,csharp,go,java,javascript,python,ruby 
         tools: ${{ steps.prepare-test.outputs.tools-url }}
     - name: Build code
-      shell: bash
       run: ./build.sh
     - uses: ./../action/analyze
     env:

.github/workflows/update-bundle.yml

@@ -13,6 +13,10 @@ on:
     # to filter pre-release attribute.
     types: [published]
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   update-bundle:
     if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')

.github/workflows/update-proxy-release.yml

@@ -7,6 +7,10 @@ on:
         type: string
         required: true
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   update:
     name: Update code and create PR
@@ -20,7 +24,6 @@ jobs:
     steps:
       - name: Check release tag format
         id: checks
-        shell: bash
         run: |
           if ! [[ $RELEASE_TAG =~ ^codeql-bundle-v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
             echo "Invalid release tag: expected a CodeQL bundle tag in the 'codeql-bundle-vM.N.P' format."
@@ -30,7 +33,6 @@ jobs:
           echo "target_branch=dependency-proxy/$RELEASE_TAG" >> $GITHUB_OUTPUT
 
       - name: Check that the release exists
-        shell: bash
         env:
           GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
         run: |
@@ -46,20 +48,17 @@ jobs:
           ref: main
 
       - name: Update git config
-        shell: bash
         run: |
           git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git config --global user.name "github-actions[bot]"
 
       - name: Update release tag and version
-        shell: bash
         run: |
           NOW=$(date +"%Y%m%d%H%M%S") # only used to make sure we don't fetch stale binaries from the toolcache
           sed -i "s|https://github.com/github/codeql-action/releases/download/codeql-bundle-v[0-9.]\+/|https://github.com/github/codeql-action/releases/download/$RELEASE_TAG/|g" ./src/start-proxy-action.ts
           sed -i "s/\"v2.0.[0-9]\+\"/\"v2.0.$NOW\"/g" ./src/start-proxy-action.ts
 
       - name: Compile TypeScript and commit changes
-        shell: bash
         env:
           TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
         run: |
@@ -72,7 +71,6 @@ jobs:
           git commit -m "Update release used by \`start-proxy\` action"
 
       - name: Push changes and open PR
-        shell: bash
         env:
           GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
           TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}

.github/workflows/update-release-branch.yml

@@ -11,6 +11,10 @@ on:
     branches:
       - releases/*
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
 
   prepare:

CHANGELOG.md

@@ -4,11 +4,25 @@ See the [releases page](https://github.com/github/codeql-action/releases) for th
 
 ## [UNRELEASED]
 
+- We have improved the CodeQL Action's ability to validate that the workflow it is used in does not use different versions of the CodeQL Action for different workflow steps. Mixing different versions of the CodeQL Action in the same workflow is unsupported and can lead to unpredictable results. A warning will now be emitted from the `codeql-action/init` step if different versions of the CodeQL Action are detected in the workflow file. Additionally, an error will now be thrown by the other CodeQL Action steps if they load a configuration file that was generated by a different version of the `codeql-action/init` step. [#3099](https://github.com/github/codeql-action/pull/3099) and [#3100](https://github.com/github/codeql-action/pull/3100)
+- We added support for reducing the size of dependency caches for Java analyses, which will reduce cache usage and speed up workflows. This will be enabled automatically at a later time. [#3107](https://github.com/github/codeql-action/pull/3107)
+
+## 3.30.3 - 10 Sep 2025
+
 No user facing changes.
 
+## 3.30.2 - 09 Sep 2025
+
+- Fixed a bug which could cause language autodetection to fail. [#3084](https://github.com/github/codeql-action/pull/3084)
+- Experimental: The `quality-queries` input that was added in `3.29.2` as part of an internal experiment is now deprecated and will be removed in an upcoming version of the CodeQL Action. It has been superseded by a new `analysis-kinds` input, which is part of the same internal experiment. Do not use this in production as it is subject to change at any time. [#3064](https://github.com/github/codeql-action/pull/3064)
+
+## 3.30.1 - 05 Sep 2025
+
+- Update default CodeQL bundle version to 2.23.0. [#3077](https://github.com/github/codeql-action/pull/3077)
+
 ## 3.30.0 - 01 Sep 2025
 
-No user facing changes.
+- Reduce the size of the CodeQL Action, speeding up workflows by approximately 4 seconds. [#3054](https://github.com/github/codeql-action/pull/3054)
 
 ## 3.29.11 - 21 Aug 2025
 

CONTRIBUTING.md

@@ -60,7 +60,7 @@ Here are a few things you can do that will increase the likelihood of your pull
 
     You can start a release by triggering this workflow via [workflow dispatch](https://github.com/github/codeql-action/actions/workflows/update-release-branch.yml).
 1. The workflow run will open a pull request titled "Merge main into releases/v3". Follow the steps on the checklist in the pull request. Once you've checked off all but the last two of these, approve the PR and automerge it.
-1. When the "Merge main into releases/v3" pull request is merged into the `releases/v3` branch, a mergeback pull request to `main` will be automatically created. This mergeback pull request incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v3" pull request, and bumps the patch version of the CodeQL Action. 
+1. When the "Merge main into releases/v3" pull request is merged into the `releases/v3` branch, a mergeback pull request to `main` will be automatically created. This mergeback pull request incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v3" pull request, and bumps the patch version of the CodeQL Action.
 1. If a backport to an older major version is required, a pull request targeting that version's branch will also be automatically created.
 1. Approve the mergeback and backport pull request (if applicable) and automerge them.
 
@@ -68,11 +68,12 @@ Once the mergeback and backport pull request have been merged, the release is co
 
 ## Keeping the PR checks up to date (admin access required)
 
-Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred jobs that need to pass in order for a PR to turn green. You can regenerate the checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
+Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred required jobs that need to pass in order for a PR to turn green. It would be too tedious to maintain that list manually. You can regenerate the set of required checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
 
-1. By default, this script retrieves the checks from the latest SHA on `main`, so make sure that your `main` branch is up to date.
-2. Run the script. If there's a reason to, you can pass in a different SHA as a CLI argument.
-3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
+- If you run the script without an argument, it will retrieve the set of workflows that ran for the latest commit on `main`. Make sure that your local `main` branch is up to date before running the script.
+- You can specify a commit SHA as argument to retrieve the set of workflows for that commit instead. You will likely want to use this if you have a PR that removes or adds PR checks.
+
+After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
 
 Note that any updates to checks on `main` need to be backported to all currently supported major version branches, in order to maintain the same set of names for required checks.
 

lib/analyze-action-post.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -26438,7 +26438,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -26486,26 +26486,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -26538,7 +26536,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -31823,14 +31822,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -31841,7 +31840,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -77687,7 +77686,7 @@ var require_brace_expansion2 = __commonJS({
         var isSequence = isNumericSequence || isAlphaSequence;
         var isOptions = m.body.indexOf(",") >= 0;
         if (!isSequence && !isOptions) {
-          if (m.post.match(/,.*\}/)) {
+          if (m.post.match(/,(?!,).*\}/)) {
             str2 = m.pre + "{" + m.body + escClose + m.post;
             return expand(str2);
           }
@@ -102912,7 +102911,7 @@ var require_dist_node16 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -102920,7 +102919,7 @@ var require_dist_node16 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -102930,12 +102929,12 @@ var require_dist_node16 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(encodeValue(operator, value2, isKeyOperator(operator) ? key : ""));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -102943,12 +102942,12 @@ var require_dist_node16 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -102963,7 +102962,7 @@ var require_dist_node16 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -117688,7 +117687,7 @@ function withGroup(groupName, f) {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 async function writeBaseDatabaseOidsFile(config, sourceRoot) {
   const gitFileOids = await getFileOidsUnderPath(sourceRoot);
@@ -117798,6 +117797,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -117914,6 +117919,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 
@@ -117921,15 +117931,6 @@ var featureConfig = {
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
@@ -117971,40 +117972,23 @@ async function getConfig(tempDir, logger) {
   const configString = fs3.readFileSync(configFile, "utf8");
   logger.debug("Loaded config:");
   logger.debug(configString);
-  return JSON.parse(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
 }
-function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
-  const augmentedConfig = cloneObject(originalUserInput);
-  if (augmentationProperties.queriesInput) {
-    if (augmentationProperties.queriesInputCombines) {
-      augmentedConfig.queries = (augmentedConfig.queries || []).concat(
-        augmentationProperties.queriesInput
-      );
-    } else {
-      augmentedConfig.queries = augmentationProperties.queriesInput;
-    }
-  }
-  if (augmentedConfig.queries?.length === 0) {
-    delete augmentedConfig.queries;
-  }
-  if (augmentationProperties.packsInput) {
-    if (augmentationProperties.packsInputCombines) {
-      if (Array.isArray(augmentedConfig.packs)) {
-        augmentedConfig.packs = (augmentedConfig.packs || []).concat(
-          augmentationProperties.packsInput
-        );
-      } else if (!augmentedConfig.packs) {
-        augmentedConfig.packs = augmentationProperties.packsInput;
-      } else {
-        const language = Object.keys(augmentedConfig.packs)[0];
-        augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(augmentationProperties.packsInput);
-      }
-    } else {
-      augmentedConfig.packs = augmentationProperties.packsInput;
-    }
-  }
-  if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-    delete augmentedConfig.packs;
+function appendExtraQueryExclusions(extraQueryExclusions, cliConfig) {
+  const augmentedConfig = cloneObject(cliConfig);
+  if (extraQueryExclusions.length === 0) {
+    return augmentedConfig;
   }
   augmentedConfig["query-filters"] = [
     // Ordering matters. If the first filter is an inclusion, it implicitly
@@ -118012,7 +117996,7 @@ function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
     // it implicitly includes all queries that are not excluded. So user
     // filters (if any) should always be first to preserve intent.
     ...augmentedConfig["query-filters"] || [],
-    ...augmentationProperties.extraQueryExclusions
+    ...extraQueryExclusions
   ];
   if (augmentedConfig["query-filters"]?.length === 0) {
     delete augmentedConfig["query-filters"];
@@ -118134,7 +118118,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         await this.getVersion(),
         "forceOverwrite" /* ForceOverwrite */
       ) ? "--force-overwrite" : "--overwrite";
-      const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+      const overlayDatabaseMode = config.overlayDatabaseMode;
       if (overlayDatabaseMode === "overlay" /* Overlay */) {
         const overlayChangesFile = await writeOverlayChangesFile(
           config,
@@ -118245,13 +118229,16 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         );
       }
     },
-    async betterResolveLanguages() {
+    async betterResolveLanguages({
+      filterToLanguagesWithQueries
+    } = { filterToLanguagesWithQueries: false }) {
       const codeqlArgs = [
         "resolve",
         "languages",
         "--format=betterjson",
         "--extractor-options-verbosity=4",
         "--extractor-include-aliases",
+        ...filterToLanguagesWithQueries ? ["--filter-to-languages-with-queries"] : [],
         ...getExtraOptionsFromEnv(["resolve", "languages"])
       ];
       const output = await runCli(cmd, codeqlArgs);
@@ -118290,7 +118277,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
@@ -118548,9 +118534,9 @@ async function runCli(cmd, args = [], opts = {}) {
 }
 async function writeCodeScanningConfigFile(config, logger) {
   const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-  const augmentedConfig = generateCodeScanningConfig(
-    config.originalUserInput,
-    config.augmentationProperties
+  const augmentedConfig = appendExtraQueryExclusions(
+    config.extraQueryExclusions,
+    config.computedConfig
   );
   logger.info(
     `Writing augmented user configuration file to ${codeScanningConfigFile}`

lib/autobuild-action.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -26438,7 +26438,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -26486,26 +26486,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -26538,7 +26536,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -31823,14 +31822,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -31841,7 +31840,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -78249,8 +78248,8 @@ var path3 = __toESM(require("path"));
 var semver3 = __toESM(require_semver2());
 
 // src/defaults.json
-var bundleVersion = "codeql-bundle-v2.22.4";
-var cliVersion = "2.22.4";
+var bundleVersion = "codeql-bundle-v2.23.0";
+var cliVersion = "2.23.0";
 
 // src/overlay-database-utils.ts
 var fs2 = __toESM(require("fs"));
@@ -78428,7 +78427,7 @@ function getActionsLogger() {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 async function writeBaseDatabaseOidsFile(config, sourceRoot) {
   const gitFileOids = await getFileOidsUnderPath(sourceRoot);
@@ -78536,6 +78535,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -78652,6 +78657,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 var FEATURE_FLAGS_FILE_NAME = "cached-feature-flags.json";
@@ -78923,15 +78933,6 @@ var GitHubFeatureFlags = class {
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
@@ -78973,40 +78974,23 @@ async function getConfig(tempDir, logger) {
   const configString = fs4.readFileSync(configFile, "utf8");
   logger.debug("Loaded config:");
   logger.debug(configString);
-  return JSON.parse(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
 }
-function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
-  const augmentedConfig = cloneObject(originalUserInput);
-  if (augmentationProperties.queriesInput) {
-    if (augmentationProperties.queriesInputCombines) {
-      augmentedConfig.queries = (augmentedConfig.queries || []).concat(
-        augmentationProperties.queriesInput
-      );
-    } else {
-      augmentedConfig.queries = augmentationProperties.queriesInput;
-    }
-  }
-  if (augmentedConfig.queries?.length === 0) {
-    delete augmentedConfig.queries;
-  }
-  if (augmentationProperties.packsInput) {
-    if (augmentationProperties.packsInputCombines) {
-      if (Array.isArray(augmentedConfig.packs)) {
-        augmentedConfig.packs = (augmentedConfig.packs || []).concat(
-          augmentationProperties.packsInput
-        );
-      } else if (!augmentedConfig.packs) {
-        augmentedConfig.packs = augmentationProperties.packsInput;
-      } else {
-        const language = Object.keys(augmentedConfig.packs)[0];
-        augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(augmentationProperties.packsInput);
-      }
-    } else {
-      augmentedConfig.packs = augmentationProperties.packsInput;
-    }
-  }
-  if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-    delete augmentedConfig.packs;
+function appendExtraQueryExclusions(extraQueryExclusions, cliConfig) {
+  const augmentedConfig = cloneObject(cliConfig);
+  if (extraQueryExclusions.length === 0) {
+    return augmentedConfig;
   }
   augmentedConfig["query-filters"] = [
     // Ordering matters. If the first filter is an inclusion, it implicitly
@@ -79014,7 +78998,7 @@ function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
     // it implicitly includes all queries that are not excluded. So user
     // filters (if any) should always be first to preserve intent.
     ...augmentedConfig["query-filters"] || [],
-    ...augmentationProperties.extraQueryExclusions
+    ...extraQueryExclusions
   ];
   if (augmentedConfig["query-filters"]?.length === 0) {
     delete augmentedConfig["query-filters"];
@@ -79169,7 +79153,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         await this.getVersion(),
         "forceOverwrite" /* ForceOverwrite */
       ) ? "--force-overwrite" : "--overwrite";
-      const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+      const overlayDatabaseMode = config.overlayDatabaseMode;
       if (overlayDatabaseMode === "overlay" /* Overlay */) {
         const overlayChangesFile = await writeOverlayChangesFile(
           config,
@@ -79280,13 +79264,16 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         );
       }
     },
-    async betterResolveLanguages() {
+    async betterResolveLanguages({
+      filterToLanguagesWithQueries
+    } = { filterToLanguagesWithQueries: false }) {
       const codeqlArgs = [
         "resolve",
         "languages",
         "--format=betterjson",
         "--extractor-options-verbosity=4",
         "--extractor-include-aliases",
+        ...filterToLanguagesWithQueries ? ["--filter-to-languages-with-queries"] : [],
         ...getExtraOptionsFromEnv(["resolve", "languages"])
       ];
       const output = await runCli(cmd, codeqlArgs);
@@ -79325,7 +79312,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
@@ -79583,9 +79569,9 @@ async function runCli(cmd, args = [], opts = {}) {
 }
 async function writeCodeScanningConfigFile(config, logger) {
   const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-  const augmentedConfig = generateCodeScanningConfig(
-    config.originalUserInput,
-    config.augmentationProperties
+  const augmentedConfig = appendExtraQueryExclusions(
+    config.extraQueryExclusions,
+    config.computedConfig
   );
   logger.info(
     `Writing augmented user configuration file to ${codeScanningConfigFile}`

lib/defaults.json

@@ -1,6 +1,6 @@
 {
-  "bundleVersion": "codeql-bundle-v2.22.4",
-  "cliVersion": "2.22.4",
-  "priorBundleVersion": "codeql-bundle-v2.22.3",
-  "priorCliVersion": "2.22.3"
+  "bundleVersion": "codeql-bundle-v2.23.0",
+  "cliVersion": "2.23.0",
+  "priorBundleVersion": "codeql-bundle-v2.22.4",
+  "priorCliVersion": "2.22.4"
 }

lib/init-action-post.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context3, operator, key, modifier) {
       var value = context3[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context3, operator, key, modifier) {
       var value = context3[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -32287,7 +32287,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -32335,26 +32335,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -32387,7 +32385,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -37672,14 +37671,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -37690,7 +37689,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -83536,7 +83535,7 @@ var require_brace_expansion2 = __commonJS({
         var isSequence = isNumericSequence || isAlphaSequence;
         var isOptions = m.body.indexOf(",") >= 0;
         if (!isSequence && !isOptions) {
-          if (m.post.match(/,.*\}/)) {
+          if (m.post.match(/,(?!,).*\}/)) {
             str2 = m.pre + "{" + m.body + escClose + m.post;
             return expand(str2);
           }
@@ -108761,7 +108760,7 @@ var require_dist_node16 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -108769,7 +108768,7 @@ var require_dist_node16 = __commonJS({
     }
     function getValues(context3, operator, key, modifier) {
       var value = context3[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -108779,12 +108778,12 @@ var require_dist_node16 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(encodeValue(operator, value2, isKeyOperator(operator) ? key : ""));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -108792,12 +108791,12 @@ var require_dist_node16 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -108812,7 +108811,7 @@ var require_dist_node16 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -128756,6 +128755,22 @@ var AnalysisKind = /* @__PURE__ */ ((AnalysisKind2) => {
   return AnalysisKind2;
 })(AnalysisKind || {});
 var supportedAnalysisKinds = new Set(Object.values(AnalysisKind));
+var CodeScanning = {
+  kind: "code-scanning" /* CodeScanning */,
+  name: "code scanning",
+  target: "PUT /repos/:owner/:repo/code-scanning/analysis" /* CODE_SCANNING */,
+  sarifExtension: ".sarif",
+  sarifPredicate: (name) => name.endsWith(CodeScanning.sarifExtension) && !CodeQuality.sarifPredicate(name),
+  sentinelPrefix: "CODEQL_UPLOAD_SARIF_"
+};
+var CodeQuality = {
+  kind: "code-quality" /* CodeQuality */,
+  name: "code quality",
+  target: "PUT /repos/:owner/:repo/code-quality/analysis" /* CODE_QUALITY */,
+  sarifExtension: ".quality.sarif",
+  sarifPredicate: (name) => name.endsWith(CodeQuality.sarifExtension),
+  sentinelPrefix: "CODEQL_UPLOAD_QUALITY_SARIF_"
+};
 
 // src/caching-utils.ts
 var core6 = __toESM(require_core());
@@ -128770,8 +128785,8 @@ var path8 = __toESM(require("path"));
 var semver3 = __toESM(require_semver2());
 
 // src/defaults.json
-var bundleVersion = "codeql-bundle-v2.22.4";
-var cliVersion = "2.22.4";
+var bundleVersion = "codeql-bundle-v2.23.0";
+var cliVersion = "2.23.0";
 
 // src/overlay-database-utils.ts
 var fs6 = __toESM(require("fs"));
@@ -129002,7 +129017,7 @@ function formatDuration(durationMs) {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 async function writeBaseDatabaseOidsFile(config, sourceRoot) {
   const gitFileOids = await getFileOidsUnderPath(sourceRoot);
@@ -129115,6 +129130,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -129231,6 +129252,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 var FEATURE_FLAGS_FILE_NAME = "cached-feature-flags.json";
@@ -129520,15 +129546,6 @@ ${jsonContents}`
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
@@ -129570,40 +129587,23 @@ async function getConfig(tempDir, logger) {
   const configString = fs9.readFileSync(configFile, "utf8");
   logger.debug("Loaded config:");
   logger.debug(configString);
-  return JSON.parse(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
 }
-function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
-  const augmentedConfig = cloneObject(originalUserInput);
-  if (augmentationProperties.queriesInput) {
-    if (augmentationProperties.queriesInputCombines) {
-      augmentedConfig.queries = (augmentedConfig.queries || []).concat(
-        augmentationProperties.queriesInput
-      );
-    } else {
-      augmentedConfig.queries = augmentationProperties.queriesInput;
-    }
-  }
-  if (augmentedConfig.queries?.length === 0) {
-    delete augmentedConfig.queries;
-  }
-  if (augmentationProperties.packsInput) {
-    if (augmentationProperties.packsInputCombines) {
-      if (Array.isArray(augmentedConfig.packs)) {
-        augmentedConfig.packs = (augmentedConfig.packs || []).concat(
-          augmentationProperties.packsInput
-        );
-      } else if (!augmentedConfig.packs) {
-        augmentedConfig.packs = augmentationProperties.packsInput;
-      } else {
-        const language = Object.keys(augmentedConfig.packs)[0];
-        augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(augmentationProperties.packsInput);
-      }
-    } else {
-      augmentedConfig.packs = augmentationProperties.packsInput;
-    }
-  }
-  if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-    delete augmentedConfig.packs;
+function appendExtraQueryExclusions(extraQueryExclusions, cliConfig) {
+  const augmentedConfig = cloneObject(cliConfig);
+  if (extraQueryExclusions.length === 0) {
+    return augmentedConfig;
   }
   augmentedConfig["query-filters"] = [
     // Ordering matters. If the first filter is an inclusion, it implicitly
@@ -129611,7 +129611,7 @@ function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
     // it implicitly includes all queries that are not excluded. So user
     // filters (if any) should always be first to preserve intent.
     ...augmentedConfig["query-filters"] || [],
-    ...augmentationProperties.extraQueryExclusions
+    ...extraQueryExclusions
   ];
   if (augmentedConfig["query-filters"]?.length === 0) {
     delete augmentedConfig["query-filters"];
@@ -129626,7 +129626,7 @@ var toolcache3 = __toESM(require_tool_cache());
 var import_fast_deep_equal = __toESM(require_fast_deep_equal());
 var semver7 = __toESM(require_semver2());
 
-// node_modules/uuid/dist/esm/stringify.js
+// node_modules/uuid/dist/stringify.js
 var byteToHex = [];
 for (let i = 0; i < 256; ++i) {
   byteToHex.push((i + 256).toString(16).slice(1));
@@ -129635,27 +129635,24 @@ function unsafeStringify(arr, offset = 0) {
   return (byteToHex[arr[offset + 0]] + byteToHex[arr[offset + 1]] + byteToHex[arr[offset + 2]] + byteToHex[arr[offset + 3]] + "-" + byteToHex[arr[offset + 4]] + byteToHex[arr[offset + 5]] + "-" + byteToHex[arr[offset + 6]] + byteToHex[arr[offset + 7]] + "-" + byteToHex[arr[offset + 8]] + byteToHex[arr[offset + 9]] + "-" + byteToHex[arr[offset + 10]] + byteToHex[arr[offset + 11]] + byteToHex[arr[offset + 12]] + byteToHex[arr[offset + 13]] + byteToHex[arr[offset + 14]] + byteToHex[arr[offset + 15]]).toLowerCase();
 }
 
-// node_modules/uuid/dist/esm/rng.js
-var import_crypto = require("crypto");
+// node_modules/uuid/dist/rng.js
+var import_node_crypto = require("node:crypto");
 var rnds8Pool = new Uint8Array(256);
 var poolPtr = rnds8Pool.length;
 function rng() {
   if (poolPtr > rnds8Pool.length - 16) {
-    (0, import_crypto.randomFillSync)(rnds8Pool);
+    (0, import_node_crypto.randomFillSync)(rnds8Pool);
     poolPtr = 0;
   }
   return rnds8Pool.slice(poolPtr, poolPtr += 16);
 }
 
-// node_modules/uuid/dist/esm/native.js
-var import_crypto2 = require("crypto");
-var native_default = { randomUUID: import_crypto2.randomUUID };
+// node_modules/uuid/dist/native.js
+var import_node_crypto2 = require("node:crypto");
+var native_default = { randomUUID: import_node_crypto2.randomUUID };
 
-// node_modules/uuid/dist/esm/v4.js
-function v4(options, buf, offset) {
-  if (native_default.randomUUID && !buf && !options) {
-    return native_default.randomUUID();
-  }
+// node_modules/uuid/dist/v4.js
+function _v4(options, buf, offset) {
   options = options || {};
   const rnds = options.random ?? options.rng?.() ?? rng();
   if (rnds.length < 16) {
@@ -129675,6 +129672,12 @@ function v4(options, buf, offset) {
   }
   return unsafeStringify(rnds);
 }
+function v4(options, buf, offset) {
+  if (native_default.randomUUID && !buf && !options) {
+    return native_default.randomUUID();
+  }
+  return _v4(options, buf, offset);
+}
 var v4_default = v4;
 
 // src/tar.ts
@@ -130588,7 +130591,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         await this.getVersion(),
         "forceOverwrite" /* ForceOverwrite */
       ) ? "--force-overwrite" : "--overwrite";
-      const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+      const overlayDatabaseMode = config.overlayDatabaseMode;
       if (overlayDatabaseMode === "overlay" /* Overlay */) {
         const overlayChangesFile = await writeOverlayChangesFile(
           config,
@@ -130699,13 +130702,16 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         );
       }
     },
-    async betterResolveLanguages() {
+    async betterResolveLanguages({
+      filterToLanguagesWithQueries
+    } = { filterToLanguagesWithQueries: false }) {
       const codeqlArgs = [
         "resolve",
         "languages",
         "--format=betterjson",
         "--extractor-options-verbosity=4",
         "--extractor-include-aliases",
+        ...filterToLanguagesWithQueries ? ["--filter-to-languages-with-queries"] : [],
         ...getExtraOptionsFromEnv(["resolve", "languages"])
       ];
       const output = await runCli(cmd, codeqlArgs);
@@ -130744,7 +130750,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
@@ -131002,9 +131007,9 @@ async function runCli(cmd, args = [], opts = {}) {
 }
 async function writeCodeScanningConfigFile(config, logger) {
   const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-  const augmentedConfig = generateCodeScanningConfig(
-    config.originalUserInput,
-    config.augmentationProperties
+  const augmentedConfig = appendExtraQueryExclusions(
+    config.extraQueryExclusions,
+    config.computedConfig
   );
   logger.info(
     `Writing augmented user configuration file to ${codeScanningConfigFile}`
@@ -132828,7 +132833,7 @@ async function combineSarifFilesUsingCLI(sarifFiles, gitHubVersion, features, lo
   return JSON.parse(fs17.readFileSync(outputFile, "utf8"));
 }
 function populateRunAutomationDetails(sarif, category, analysis_key, environment) {
-  const automationID = getAutomationID(category, analysis_key, environment);
+  const automationID = getAutomationID2(category, analysis_key, environment);
   if (automationID !== void 0) {
     for (const run2 of sarif.runs || []) {
       if (run2.automationDetails === void 0) {
@@ -132841,7 +132846,7 @@ function populateRunAutomationDetails(sarif, category, analysis_key, environment
   }
   return sarif;
 }
-function getAutomationID(category, analysis_key, environment) {
+function getAutomationID2(category, analysis_key, environment) {
   if (category !== void 0) {
     let automationID = category;
     if (!automationID.endsWith("/")) {
@@ -133019,18 +133024,6 @@ function buildPayload(commitOid, ref, analysisKey, analysisName, zippedSarif, wo
   }
   return payloadObj;
 }
-var CodeScanningTarget = {
-  name: "code scanning",
-  target: "PUT /repos/:owner/:repo/code-scanning/analysis" /* CODE_SCANNING */,
-  sarifPredicate: (name) => name.endsWith(".sarif") && !CodeQualityTarget.sarifPredicate(name),
-  sentinelPrefix: "CODEQL_UPLOAD_SARIF_"
-};
-var CodeQualityTarget = {
-  name: "code quality",
-  target: "PUT /repos/:owner/:repo/code-quality/analysis" /* CODE_QUALITY */,
-  sarifPredicate: (name) => name.endsWith(".quality.sarif"),
-  sentinelPrefix: "CODEQL_UPLOAD_QUALITY_SARIF_"
-};
 async function uploadFiles(inputSarifPath, checkoutPath, category, features, logger, uploadTarget) {
   const sarifPaths = getSarifFilePaths(
     inputSarifPath,
@@ -133045,7 +133038,7 @@ async function uploadFiles(inputSarifPath, checkoutPath, category, features, log
     uploadTarget
   );
 }
-async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features, logger, uploadTarget = CodeScanningTarget) {
+async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features, logger, uploadTarget) {
   logger.startGroup(`Uploading ${uploadTarget.name} results`);
   logger.info(`Processing sarif files: ${JSON.stringify(sarifPaths)}`);
   const gitHubVersion = await getGitHubVersion();
@@ -133082,6 +133075,10 @@ async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features
   validateUniqueCategory(sarif, uploadTarget.sentinelPrefix);
   logger.debug(`Serializing SARIF for upload`);
   const sarifPayload = JSON.stringify(sarif);
+  const dumpDir = process.env["CODEQL_ACTION_SARIF_DUMP_DIR" /* SARIF_DUMP_DIR */];
+  if (dumpDir) {
+    dumpSarifFile(sarifPayload, dumpDir, logger, uploadTarget);
+  }
   logger.debug(`Compressing serialized SARIF`);
   const zippedSarif = import_zlib.default.gzipSync(sarifPayload).toString("base64");
   const checkoutURI = url.pathToFileURL(checkoutPath).href;
@@ -133120,6 +133117,21 @@ async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features
     sarifID
   };
 }
+function dumpSarifFile(sarifPayload, outputDir, logger, uploadTarget) {
+  if (!fs17.existsSync(outputDir)) {
+    fs17.mkdirSync(outputDir, { recursive: true });
+  } else if (!fs17.lstatSync(outputDir).isDirectory()) {
+    throw new ConfigurationError(
+      `The path specified by the ${"CODEQL_ACTION_SARIF_DUMP_DIR" /* SARIF_DUMP_DIR */} environment variable exists and is not a directory: ${outputDir}`
+    );
+  }
+  const outputFile = path17.resolve(
+    outputDir,
+    `upload${uploadTarget.sarifExtension}`
+  );
+  logger.info(`Dumping processed SARIF file to ${outputFile}`);
+  fs17.writeFileSync(outputFile, sarifPayload);
+}
 var STATUS_CHECK_FREQUENCY_MILLISECONDS = 5 * 1e3;
 var STATUS_CHECK_TIMEOUT_MILLISECONDS = 2 * 60 * 1e3;
 async function waitForProcessing(repositoryNwo, sarifID, logger, options = {
@@ -133216,7 +133228,7 @@ function handleProcessingResultForUnsuccessfulExecution(response, status, logger
     assertNever(status);
   }
 }
-function validateUniqueCategory(sarif, sentinelPrefix = CodeScanningTarget.sentinelPrefix) {
+function validateUniqueCategory(sarif, sentinelPrefix) {
   const categories = {};
   for (const run2 of sarif.runs) {
     const id = run2?.automationDetails?.id;
@@ -133288,7 +133300,8 @@ function toCodedErrors(errors) {
 }
 var WorkflowErrors = toCodedErrors({
   MissingPushHook: `Please specify an on.push hook to analyze and see code scanning alerts from the default branch on the Security tab.`,
-  CheckoutWrongHead: `git checkout HEAD^2 is no longer necessary. Please remove this step as Code Scanning recommends analyzing the merge commit for best results.`
+  CheckoutWrongHead: `git checkout HEAD^2 is no longer necessary. Please remove this step as Code Scanning recommends analyzing the merge commit for best results.`,
+  InconsistentActionVersion: `Not all workflow steps that use \`github/codeql-action\` actions use the same version. Please ensure that all such steps use the same version to avoid compatibility issues.`
 });
 async function getWorkflow(logger) {
   const maybeWorkflow = process.env["CODE_SCANNING_WORKFLOW_FILE"];
@@ -133441,7 +133454,7 @@ async function maybeUploadFailedSarif(config, repositoryNwo, features, logger) {
     category,
     features,
     logger,
-    CodeScanningTarget
+    CodeScanning
   );
   await waitForProcessing(
     repositoryNwo,

lib/resolve-environment-action.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -26438,7 +26438,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -26486,26 +26486,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -26538,7 +26536,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -31823,14 +31822,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -31841,7 +31840,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -78421,7 +78420,7 @@ function getActionsLogger() {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 async function writeBaseDatabaseOidsFile(config, sourceRoot) {
   const gitFileOids = await getFileOidsUnderPath(sourceRoot);
@@ -78527,6 +78526,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -78643,6 +78648,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 
@@ -78650,15 +78660,6 @@ var featureConfig = {
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
@@ -78700,40 +78701,23 @@ async function getConfig(tempDir, logger) {
   const configString = fs3.readFileSync(configFile, "utf8");
   logger.debug("Loaded config:");
   logger.debug(configString);
-  return JSON.parse(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
 }
-function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
-  const augmentedConfig = cloneObject(originalUserInput);
-  if (augmentationProperties.queriesInput) {
-    if (augmentationProperties.queriesInputCombines) {
-      augmentedConfig.queries = (augmentedConfig.queries || []).concat(
-        augmentationProperties.queriesInput
-      );
-    } else {
-      augmentedConfig.queries = augmentationProperties.queriesInput;
-    }
-  }
-  if (augmentedConfig.queries?.length === 0) {
-    delete augmentedConfig.queries;
-  }
-  if (augmentationProperties.packsInput) {
-    if (augmentationProperties.packsInputCombines) {
-      if (Array.isArray(augmentedConfig.packs)) {
-        augmentedConfig.packs = (augmentedConfig.packs || []).concat(
-          augmentationProperties.packsInput
-        );
-      } else if (!augmentedConfig.packs) {
-        augmentedConfig.packs = augmentationProperties.packsInput;
-      } else {
-        const language = Object.keys(augmentedConfig.packs)[0];
-        augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(augmentationProperties.packsInput);
-      }
-    } else {
-      augmentedConfig.packs = augmentationProperties.packsInput;
-    }
-  }
-  if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-    delete augmentedConfig.packs;
+function appendExtraQueryExclusions(extraQueryExclusions, cliConfig) {
+  const augmentedConfig = cloneObject(cliConfig);
+  if (extraQueryExclusions.length === 0) {
+    return augmentedConfig;
   }
   augmentedConfig["query-filters"] = [
     // Ordering matters. If the first filter is an inclusion, it implicitly
@@ -78741,7 +78725,7 @@ function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
     // it implicitly includes all queries that are not excluded. So user
     // filters (if any) should always be first to preserve intent.
     ...augmentedConfig["query-filters"] || [],
-    ...augmentationProperties.extraQueryExclusions
+    ...extraQueryExclusions
   ];
   if (augmentedConfig["query-filters"]?.length === 0) {
     delete augmentedConfig["query-filters"];
@@ -78869,7 +78853,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         await this.getVersion(),
         "forceOverwrite" /* ForceOverwrite */
       ) ? "--force-overwrite" : "--overwrite";
-      const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+      const overlayDatabaseMode = config.overlayDatabaseMode;
       if (overlayDatabaseMode === "overlay" /* Overlay */) {
         const overlayChangesFile = await writeOverlayChangesFile(
           config,
@@ -78980,13 +78964,16 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         );
       }
     },
-    async betterResolveLanguages() {
+    async betterResolveLanguages({
+      filterToLanguagesWithQueries
+    } = { filterToLanguagesWithQueries: false }) {
       const codeqlArgs = [
         "resolve",
         "languages",
         "--format=betterjson",
         "--extractor-options-verbosity=4",
         "--extractor-include-aliases",
+        ...filterToLanguagesWithQueries ? ["--filter-to-languages-with-queries"] : [],
         ...getExtraOptionsFromEnv(["resolve", "languages"])
       ];
       const output = await runCli(cmd, codeqlArgs);
@@ -79025,7 +79012,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
@@ -79283,9 +79269,9 @@ async function runCli(cmd, args = [], opts = {}) {
 }
 async function writeCodeScanningConfigFile(config, logger) {
   const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-  const augmentedConfig = generateCodeScanningConfig(
-    config.originalUserInput,
-    config.augmentationProperties
+  const augmentedConfig = appendExtraQueryExclusions(
+    config.extraQueryExclusions,
+    config.computedConfig
   );
   logger.info(
     `Writing augmented user configuration file to ${codeScanningConfigFile}`

lib/start-proxy-action-post.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -26438,7 +26438,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -26486,26 +26486,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -26538,7 +26536,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -31823,14 +31822,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -31841,7 +31840,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -76347,7 +76346,7 @@ var require_brace_expansion2 = __commonJS({
         var isSequence = isNumericSequence || isAlphaSequence;
         var isOptions = m.body.indexOf(",") >= 0;
         if (!isSequence && !isOptions) {
-          if (m.post.match(/,.*\}/)) {
+          if (m.post.match(/,(?!,).*\}/)) {
             str2 = m.pre + "{" + m.body + escClose + m.post;
             return expand(str2);
           }
@@ -101572,7 +101571,7 @@ var require_dist_node16 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -101580,7 +101579,7 @@ var require_dist_node16 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -101590,12 +101589,12 @@ var require_dist_node16 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(encodeValue(operator, value2, isKeyOperator(operator) ? key : ""));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -101603,12 +101602,12 @@ var require_dist_node16 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -101623,7 +101622,7 @@ var require_dist_node16 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -117160,7 +117159,7 @@ function getActionsLogger() {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 
 // src/tools-features.ts
@@ -117207,6 +117206,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -117323,6 +117328,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 
@@ -117330,15 +117340,6 @@ var featureConfig = {
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
@@ -117380,7 +117381,18 @@ async function getConfig(tempDir, logger) {
   const configString = fs.readFileSync(configFile, "utf8");
   logger.debug("Loaded config:");
   logger.debug(configString);
-  return JSON.parse(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
 }
 
 // src/debug-artifacts.ts

lib/upload-lib.js

@@ -21585,7 +21585,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21593,7 +21593,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21605,14 +21605,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21620,12 +21620,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21640,7 +21640,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -22325,7 +22325,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -22333,7 +22333,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -22345,14 +22345,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -22360,12 +22360,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -22380,7 +22380,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -33584,7 +33584,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -33632,26 +33632,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -33684,7 +33682,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -38969,14 +38968,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -38987,7 +38986,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -84780,10 +84779,7 @@ var require_sarif_schema_2_1_0 = __commonJS({
 // src/upload-lib.ts
 var upload_lib_exports = {};
 __export(upload_lib_exports, {
-  CodeQualityTarget: () => CodeQualityTarget,
-  CodeScanningTarget: () => CodeScanningTarget,
   InvalidSarifUploadError: () => InvalidSarifUploadError,
-  SARIF_UPLOAD_ENDPOINT: () => SARIF_UPLOAD_ENDPOINT,
   buildPayload: () => buildPayload,
   findSarifFilesInDir: () => findSarifFilesInDir,
   getSarifFilePaths: () => getSarifFilePaths,
@@ -88898,8 +88894,8 @@ var path8 = __toESM(require("path"));
 var semver3 = __toESM(require_semver2());
 
 // src/defaults.json
-var bundleVersion = "codeql-bundle-v2.22.4";
-var cliVersion = "2.22.4";
+var bundleVersion = "codeql-bundle-v2.23.0";
+var cliVersion = "2.23.0";
 
 // src/overlay-database-utils.ts
 var fs5 = __toESM(require("fs"));
@@ -89119,7 +89115,7 @@ function formatDuration(durationMs) {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 async function writeBaseDatabaseOidsFile(config, sourceRoot) {
   const gitFileOids = await getFileOidsUnderPath(sourceRoot);
@@ -89226,6 +89222,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -89342,6 +89344,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 
@@ -89367,15 +89374,6 @@ ${jsonContents}`
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
@@ -89417,40 +89415,23 @@ async function getConfig(tempDir, logger) {
   const configString = fs7.readFileSync(configFile, "utf8");
   logger.debug("Loaded config:");
   logger.debug(configString);
-  return JSON.parse(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
 }
-function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
-  const augmentedConfig = cloneObject(originalUserInput);
-  if (augmentationProperties.queriesInput) {
-    if (augmentationProperties.queriesInputCombines) {
-      augmentedConfig.queries = (augmentedConfig.queries || []).concat(
-        augmentationProperties.queriesInput
-      );
-    } else {
-      augmentedConfig.queries = augmentationProperties.queriesInput;
-    }
-  }
-  if (augmentedConfig.queries?.length === 0) {
-    delete augmentedConfig.queries;
-  }
-  if (augmentationProperties.packsInput) {
-    if (augmentationProperties.packsInputCombines) {
-      if (Array.isArray(augmentedConfig.packs)) {
-        augmentedConfig.packs = (augmentedConfig.packs || []).concat(
-          augmentationProperties.packsInput
-        );
-      } else if (!augmentedConfig.packs) {
-        augmentedConfig.packs = augmentationProperties.packsInput;
-      } else {
-        const language = Object.keys(augmentedConfig.packs)[0];
-        augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(augmentationProperties.packsInput);
-      }
-    } else {
-      augmentedConfig.packs = augmentationProperties.packsInput;
-    }
-  }
-  if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-    delete augmentedConfig.packs;
+function appendExtraQueryExclusions(extraQueryExclusions, cliConfig) {
+  const augmentedConfig = cloneObject(cliConfig);
+  if (extraQueryExclusions.length === 0) {
+    return augmentedConfig;
   }
   augmentedConfig["query-filters"] = [
     // Ordering matters. If the first filter is an inclusion, it implicitly
@@ -89458,7 +89439,7 @@ function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
     // it implicitly includes all queries that are not excluded. So user
     // filters (if any) should always be first to preserve intent.
     ...augmentedConfig["query-filters"] || [],
-    ...augmentationProperties.extraQueryExclusions
+    ...extraQueryExclusions
   ];
   if (augmentedConfig["query-filters"]?.length === 0) {
     delete augmentedConfig["query-filters"];
@@ -89473,7 +89454,7 @@ var toolcache3 = __toESM(require_tool_cache());
 var import_fast_deep_equal = __toESM(require_fast_deep_equal());
 var semver7 = __toESM(require_semver2());
 
-// node_modules/uuid/dist/esm/stringify.js
+// node_modules/uuid/dist/stringify.js
 var byteToHex = [];
 for (let i = 0; i < 256; ++i) {
   byteToHex.push((i + 256).toString(16).slice(1));
@@ -89482,27 +89463,24 @@ function unsafeStringify(arr, offset = 0) {
   return (byteToHex[arr[offset + 0]] + byteToHex[arr[offset + 1]] + byteToHex[arr[offset + 2]] + byteToHex[arr[offset + 3]] + "-" + byteToHex[arr[offset + 4]] + byteToHex[arr[offset + 5]] + "-" + byteToHex[arr[offset + 6]] + byteToHex[arr[offset + 7]] + "-" + byteToHex[arr[offset + 8]] + byteToHex[arr[offset + 9]] + "-" + byteToHex[arr[offset + 10]] + byteToHex[arr[offset + 11]] + byteToHex[arr[offset + 12]] + byteToHex[arr[offset + 13]] + byteToHex[arr[offset + 14]] + byteToHex[arr[offset + 15]]).toLowerCase();
 }
 
-// node_modules/uuid/dist/esm/rng.js
-var import_crypto = require("crypto");
+// node_modules/uuid/dist/rng.js
+var import_node_crypto = require("node:crypto");
 var rnds8Pool = new Uint8Array(256);
 var poolPtr = rnds8Pool.length;
 function rng() {
   if (poolPtr > rnds8Pool.length - 16) {
-    (0, import_crypto.randomFillSync)(rnds8Pool);
+    (0, import_node_crypto.randomFillSync)(rnds8Pool);
     poolPtr = 0;
   }
   return rnds8Pool.slice(poolPtr, poolPtr += 16);
 }
 
-// node_modules/uuid/dist/esm/native.js
-var import_crypto2 = require("crypto");
-var native_default = { randomUUID: import_crypto2.randomUUID };
+// node_modules/uuid/dist/native.js
+var import_node_crypto2 = require("node:crypto");
+var native_default = { randomUUID: import_node_crypto2.randomUUID };
 
-// node_modules/uuid/dist/esm/v4.js
-function v4(options, buf, offset) {
-  if (native_default.randomUUID && !buf && !options) {
-    return native_default.randomUUID();
-  }
+// node_modules/uuid/dist/v4.js
+function _v4(options, buf, offset) {
   options = options || {};
   const rnds = options.random ?? options.rng?.() ?? rng();
   if (rnds.length < 16) {
@@ -89522,6 +89500,12 @@ function v4(options, buf, offset) {
   }
   return unsafeStringify(rnds);
 }
+function v4(options, buf, offset) {
+  if (native_default.randomUUID && !buf && !options) {
+    return native_default.randomUUID();
+  }
+  return _v4(options, buf, offset);
+}
 var v4_default = v4;
 
 // src/tar.ts
@@ -90435,7 +90419,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         await this.getVersion(),
         "forceOverwrite" /* ForceOverwrite */
       ) ? "--force-overwrite" : "--overwrite";
-      const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+      const overlayDatabaseMode = config.overlayDatabaseMode;
       if (overlayDatabaseMode === "overlay" /* Overlay */) {
         const overlayChangesFile = await writeOverlayChangesFile(
           config,
@@ -90546,13 +90530,16 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         );
       }
     },
-    async betterResolveLanguages() {
+    async betterResolveLanguages({
+      filterToLanguagesWithQueries
+    } = { filterToLanguagesWithQueries: false }) {
       const codeqlArgs = [
         "resolve",
         "languages",
         "--format=betterjson",
         "--extractor-options-verbosity=4",
         "--extractor-include-aliases",
+        ...filterToLanguagesWithQueries ? ["--filter-to-languages-with-queries"] : [],
         ...getExtraOptionsFromEnv(["resolve", "languages"])
       ];
       const output = await runCli(cmd, codeqlArgs);
@@ -90591,7 +90578,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
@@ -90849,9 +90835,9 @@ async function runCli(cmd, args = [], opts = {}) {
 }
 async function writeCodeScanningConfigFile(config, logger) {
   const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-  const augmentedConfig = generateCodeScanningConfig(
-    config.originalUserInput,
-    config.augmentationProperties
+  const augmentedConfig = appendExtraQueryExclusions(
+    config.extraQueryExclusions,
+    config.computedConfig
   );
   logger.info(
     `Writing augmented user configuration file to ${codeScanningConfigFile}`
@@ -92219,7 +92205,7 @@ async function combineSarifFilesUsingCLI(sarifFiles, gitHubVersion, features, lo
   return JSON.parse(fs13.readFileSync(outputFile, "utf8"));
 }
 function populateRunAutomationDetails(sarif, category, analysis_key, environment) {
-  const automationID = getAutomationID(category, analysis_key, environment);
+  const automationID = getAutomationID2(category, analysis_key, environment);
   if (automationID !== void 0) {
     for (const run of sarif.runs || []) {
       if (run.automationDetails === void 0) {
@@ -92232,7 +92218,7 @@ function populateRunAutomationDetails(sarif, category, analysis_key, environment
   }
   return sarif;
 }
-function getAutomationID(category, analysis_key, environment) {
+function getAutomationID2(category, analysis_key, environment) {
   if (category !== void 0) {
     let automationID = category;
     if (!automationID.endsWith("/")) {
@@ -92242,11 +92228,6 @@ function getAutomationID(category, analysis_key, environment) {
   }
   return computeAutomationID(analysis_key, environment);
 }
-var SARIF_UPLOAD_ENDPOINT = /* @__PURE__ */ ((SARIF_UPLOAD_ENDPOINT2) => {
-  SARIF_UPLOAD_ENDPOINT2["CODE_SCANNING"] = "PUT /repos/:owner/:repo/code-scanning/analysis";
-  SARIF_UPLOAD_ENDPOINT2["CODE_QUALITY"] = "PUT /repos/:owner/:repo/code-quality/analysis";
-  return SARIF_UPLOAD_ENDPOINT2;
-})(SARIF_UPLOAD_ENDPOINT || {});
 async function uploadPayload(payload, repositoryNwo, logger, target) {
   logger.info("Uploading results");
   if (isInTestMode()) {
@@ -92415,18 +92396,6 @@ function buildPayload(commitOid, ref, analysisKey, analysisName, zippedSarif, wo
   }
   return payloadObj;
 }
-var CodeScanningTarget = {
-  name: "code scanning",
-  target: "PUT /repos/:owner/:repo/code-scanning/analysis" /* CODE_SCANNING */,
-  sarifPredicate: (name) => name.endsWith(".sarif") && !CodeQualityTarget.sarifPredicate(name),
-  sentinelPrefix: "CODEQL_UPLOAD_SARIF_"
-};
-var CodeQualityTarget = {
-  name: "code quality",
-  target: "PUT /repos/:owner/:repo/code-quality/analysis" /* CODE_QUALITY */,
-  sarifPredicate: (name) => name.endsWith(".quality.sarif"),
-  sentinelPrefix: "CODEQL_UPLOAD_QUALITY_SARIF_"
-};
 async function uploadFiles(inputSarifPath, checkoutPath, category, features, logger, uploadTarget) {
   const sarifPaths = getSarifFilePaths(
     inputSarifPath,
@@ -92441,7 +92410,7 @@ async function uploadFiles(inputSarifPath, checkoutPath, category, features, log
     uploadTarget
   );
 }
-async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features, logger, uploadTarget = CodeScanningTarget) {
+async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features, logger, uploadTarget) {
   logger.startGroup(`Uploading ${uploadTarget.name} results`);
   logger.info(`Processing sarif files: ${JSON.stringify(sarifPaths)}`);
   const gitHubVersion = await getGitHubVersion();
@@ -92478,6 +92447,10 @@ async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features
   validateUniqueCategory(sarif, uploadTarget.sentinelPrefix);
   logger.debug(`Serializing SARIF for upload`);
   const sarifPayload = JSON.stringify(sarif);
+  const dumpDir = process.env["CODEQL_ACTION_SARIF_DUMP_DIR" /* SARIF_DUMP_DIR */];
+  if (dumpDir) {
+    dumpSarifFile(sarifPayload, dumpDir, logger, uploadTarget);
+  }
   logger.debug(`Compressing serialized SARIF`);
   const zippedSarif = import_zlib.default.gzipSync(sarifPayload).toString("base64");
   const checkoutURI = url.pathToFileURL(checkoutPath).href;
@@ -92516,6 +92489,21 @@ async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features
     sarifID
   };
 }
+function dumpSarifFile(sarifPayload, outputDir, logger, uploadTarget) {
+  if (!fs13.existsSync(outputDir)) {
+    fs13.mkdirSync(outputDir, { recursive: true });
+  } else if (!fs13.lstatSync(outputDir).isDirectory()) {
+    throw new ConfigurationError(
+      `The path specified by the ${"CODEQL_ACTION_SARIF_DUMP_DIR" /* SARIF_DUMP_DIR */} environment variable exists and is not a directory: ${outputDir}`
+    );
+  }
+  const outputFile = path14.resolve(
+    outputDir,
+    `upload${uploadTarget.sarifExtension}`
+  );
+  logger.info(`Dumping processed SARIF file to ${outputFile}`);
+  fs13.writeFileSync(outputFile, sarifPayload);
+}
 var STATUS_CHECK_FREQUENCY_MILLISECONDS = 5 * 1e3;
 var STATUS_CHECK_TIMEOUT_MILLISECONDS = 2 * 60 * 1e3;
 async function waitForProcessing(repositoryNwo, sarifID, logger, options = {
@@ -92612,7 +92600,7 @@ function handleProcessingResultForUnsuccessfulExecution(response, status, logger
     assertNever(status);
   }
 }
-function validateUniqueCategory(sarif, sentinelPrefix = CodeScanningTarget.sentinelPrefix) {
+function validateUniqueCategory(sarif, sentinelPrefix) {
   const categories = {};
   for (const run of sarif.runs) {
     const id = run?.automationDetails?.id;
@@ -92669,10 +92657,7 @@ function filterAlertsByDiffRange(logger, sarif) {
 }
 // Annotate the CommonJS export names for ESM import in node:
 0 && (module.exports = {
-  CodeQualityTarget,
-  CodeScanningTarget,
   InvalidSarifUploadError,
-  SARIF_UPLOAD_ENDPOINT,
   buildPayload,
   findSarifFilesInDir,
   getSarifFilePaths,

lib/upload-sarif-action-post.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -26438,7 +26438,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -26486,26 +26486,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -26538,7 +26536,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -35660,14 +35659,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -35678,7 +35677,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -70469,7 +70468,7 @@ var require_brace_expansion = __commonJS({
         var isSequence = isNumericSequence || isAlphaSequence;
         var isOptions = m.body.indexOf(",") >= 0;
         if (!isSequence && !isOptions) {
-          if (m.post.match(/,.*\}/)) {
+          if (m.post.match(/,(?!,).*\}/)) {
             str2 = m.pre + "{" + m.body + escClose + m.post;
             return expand(str2);
           }
@@ -95694,7 +95693,7 @@ var require_dist_node16 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -95702,7 +95701,7 @@ var require_dist_node16 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -95712,12 +95711,12 @@ var require_dist_node16 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(encodeValue(operator, value2, isKeyOperator(operator) ? key : ""));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -95725,12 +95724,12 @@ var require_dist_node16 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -95745,7 +95744,7 @@ var require_dist_node16 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -117321,7 +117320,7 @@ function withGroup(groupName, f) {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 
 // src/tools-features.ts
@@ -117372,6 +117371,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -117488,6 +117493,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 
@@ -117495,15 +117505,6 @@ var featureConfig = {
 var actionsCache2 = __toESM(require_cache3());
 
 // src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
 var OVERLAY_ANALYSIS_FEATURES = {
   actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
   cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,

lib/upload-sarif-action.js

@@ -20288,7 +20288,7 @@ var require_dist_node2 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -20296,7 +20296,7 @@ var require_dist_node2 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -20308,14 +20308,14 @@ var require_dist_node2 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -20323,12 +20323,12 @@ var require_dist_node2 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -20343,7 +20343,7 @@ var require_dist_node2 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -21028,7 +21028,7 @@ var require_dist_node6 = __commonJS({
         return value;
       }
     }
-    function isDefined(value) {
+    function isDefined2(value) {
       return value !== void 0 && value !== null;
     }
     function isKeyOperator(operator) {
@@ -21036,7 +21036,7 @@ var require_dist_node6 = __commonJS({
     }
     function getValues(context2, operator, key, modifier) {
       var value = context2[key], result = [];
-      if (isDefined(value) && value !== "") {
+      if (isDefined2(value) && value !== "") {
         if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
           value = value.toString();
           if (modifier && modifier !== "*") {
@@ -21048,14 +21048,14 @@ var require_dist_node6 = __commonJS({
         } else {
           if (modifier === "*") {
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 result.push(
                   encodeValue(operator, value2, isKeyOperator(operator) ? key : "")
                 );
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   result.push(encodeValue(operator, value[k], k));
                 }
               });
@@ -21063,12 +21063,12 @@ var require_dist_node6 = __commonJS({
           } else {
             const tmp = [];
             if (Array.isArray(value)) {
-              value.filter(isDefined).forEach(function(value2) {
+              value.filter(isDefined2).forEach(function(value2) {
                 tmp.push(encodeValue(operator, value2));
               });
             } else {
               Object.keys(value).forEach(function(k) {
-                if (isDefined(value[k])) {
+                if (isDefined2(value[k])) {
                   tmp.push(encodeUnreserved(k));
                   tmp.push(encodeValue(operator, value[k].toString()));
                 }
@@ -21083,7 +21083,7 @@ var require_dist_node6 = __commonJS({
         }
       } else {
         if (operator === ";") {
-          if (isDefined(value)) {
+          if (isDefined2(value)) {
             result.push(encodeUnreserved(key));
           }
         } else if (value === "" && (operator === "&" || operator === "?")) {
@@ -32287,7 +32287,7 @@ var require_package = __commonJS({
   "package.json"(exports2, module2) {
     module2.exports = {
       name: "codeql",
-      version: "3.30.1",
+      version: "3.30.4",
       private: true,
       description: "CodeQL action",
       scripts: {
@@ -32335,26 +32335,24 @@ var require_package = __commonJS({
         "node-forge": "^1.3.1",
         octokit: "^5.0.3",
         semver: "^7.7.2",
-        uuid: "^11.1.0"
+        uuid: "^12.0.0"
       },
       devDependencies: {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         ava: "^6.4.1",
         esbuild: "^0.25.9",
@@ -32387,7 +32385,8 @@ var require_package = __commonJS({
         },
         "eslint-plugin-jsx-a11y": {
           semver: ">=6.3.1"
-        }
+        },
+        "brace-expansion@2.0.1": "2.0.2"
       }
     };
   }
@@ -37672,14 +37671,14 @@ var require_typeGuards = __commonJS({
   "node_modules/@azure/core-util/dist/commonjs/typeGuards.js"(exports2) {
     "use strict";
     Object.defineProperty(exports2, "__esModule", { value: true });
-    exports2.isDefined = isDefined;
+    exports2.isDefined = isDefined2;
     exports2.isObjectWithProperties = isObjectWithProperties;
     exports2.objectHasProperty = objectHasProperty;
-    function isDefined(thing) {
+    function isDefined2(thing) {
       return typeof thing !== "undefined" && thing !== null;
     }
     function isObjectWithProperties(thing, properties) {
-      if (!isDefined(thing) || typeof thing !== "object") {
+      if (!isDefined2(thing) || typeof thing !== "object") {
         return false;
       }
       for (const property of properties) {
@@ -37690,7 +37689,7 @@ var require_typeGuards = __commonJS({
       return true;
     }
     function objectHasProperty(thing, property) {
-      return isDefined(thing) && typeof thing === "object" && property in thing;
+      return isDefined2(thing) && typeof thing === "object" && property in thing;
     }
   }
 });
@@ -88720,6 +88719,30 @@ function fixCodeQualityCategory(logger, category) {
   return category;
 }
 
+// src/analyses.ts
+var AnalysisKind = /* @__PURE__ */ ((AnalysisKind2) => {
+  AnalysisKind2["CodeScanning"] = "code-scanning";
+  AnalysisKind2["CodeQuality"] = "code-quality";
+  return AnalysisKind2;
+})(AnalysisKind || {});
+var supportedAnalysisKinds = new Set(Object.values(AnalysisKind));
+var CodeScanning = {
+  kind: "code-scanning" /* CodeScanning */,
+  name: "code scanning",
+  target: "PUT /repos/:owner/:repo/code-scanning/analysis" /* CODE_SCANNING */,
+  sarifExtension: ".sarif",
+  sarifPredicate: (name) => name.endsWith(CodeScanning.sarifExtension) && !CodeQuality.sarifPredicate(name),
+  sentinelPrefix: "CODEQL_UPLOAD_SARIF_"
+};
+var CodeQuality = {
+  kind: "code-quality" /* CodeQuality */,
+  name: "code quality",
+  target: "PUT /repos/:owner/:repo/code-quality/analysis" /* CODE_QUALITY */,
+  sarifExtension: ".quality.sarif",
+  sarifPredicate: (name) => name.endsWith(CodeQuality.sarifExtension),
+  sentinelPrefix: "CODEQL_UPLOAD_QUALITY_SARIF_"
+};
+
 // src/api-client.ts
 var core5 = __toESM(require_core());
 var githubUtils = __toESM(require_utils4());
@@ -88862,8 +88885,8 @@ var path8 = __toESM(require("path"));
 var semver3 = __toESM(require_semver2());
 
 // src/defaults.json
-var bundleVersion = "codeql-bundle-v2.22.4";
-var cliVersion = "2.22.4";
+var bundleVersion = "codeql-bundle-v2.23.0";
+var cliVersion = "2.23.0";
 
 // src/overlay-database-utils.ts
 var fs5 = __toESM(require("fs"));
@@ -89086,7 +89109,7 @@ function formatDuration(durationMs) {
 
 // src/overlay-database-utils.ts
 var CODEQL_OVERLAY_MINIMUM_VERSION = "2.22.3";
-var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 6e3;
+var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB = 15e3;
 var OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_BYTES = OVERLAY_BASE_DATABASE_MAX_UPLOAD_SIZE_MB * 1e6;
 async function writeBaseDatabaseOidsFile(config, sourceRoot) {
   const gitFileOids = await getFileOidsUnderPath(sourceRoot);
@@ -89195,6 +89218,12 @@ var featureConfig = {
     legacyApi: true,
     minimumVersion: void 0
   },
+  ["resolve_supported_languages_using_cli" /* ResolveSupportedLanguagesUsingCli */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI",
+    minimumVersion: void 0,
+    toolsFeature: "builtinExtractorsSpecifyDefaultQueries" /* BuiltinExtractorsSpecifyDefaultQueries */
+  },
   ["overlay_analysis" /* OverlayAnalysis */]: {
     defaultValue: false,
     envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
@@ -89311,6 +89340,11 @@ var featureConfig = {
     envVar: "CODEQL_ACTION_QA_TELEMETRY",
     legacyApi: true,
     minimumVersion: void 0
+  },
+  ["java_minimize_dependency_jars" /* JavaMinimizeDependencyJars */]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_JAVA_MINIMIZE_DEPENDENCY_JARS",
+    minimumVersion: "2.23.0"
   }
 };
 var FEATURE_FLAGS_FILE_NAME = "cached-feature-flags.json";
@@ -89580,7 +89614,114 @@ var GitHubFeatureFlags = class {
 
 // src/status-report.ts
 var os = __toESM(require("os"));
+var core9 = __toESM(require_core());
+
+// src/config-utils.ts
+var fs8 = __toESM(require("fs"));
+var path10 = __toESM(require("path"));
+var semver4 = __toESM(require_semver2());
+
+// src/caching-utils.ts
 var core8 = __toESM(require_core());
+
+// src/diff-informed-analysis-utils.ts
+var fs7 = __toESM(require("fs"));
+var path9 = __toESM(require("path"));
+function getDiffRangesJsonFilePath() {
+  return path9.join(getTemporaryDirectory(), "pr-diff-range.json");
+}
+function readDiffRangesJsonFile(logger) {
+  const jsonFilePath = getDiffRangesJsonFilePath();
+  if (!fs7.existsSync(jsonFilePath)) {
+    logger.debug(`Diff ranges JSON file does not exist at ${jsonFilePath}`);
+    return void 0;
+  }
+  const jsonContents = fs7.readFileSync(jsonFilePath, "utf8");
+  logger.debug(
+    `Read pr-diff-range JSON file from ${jsonFilePath}:
+${jsonContents}`
+  );
+  return JSON.parse(jsonContents);
+}
+
+// src/trap-caching.ts
+var actionsCache2 = __toESM(require_cache3());
+
+// src/config-utils.ts
+var OVERLAY_ANALYSIS_FEATURES = {
+  actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
+  cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
+  csharp: "overlay_analysis_csharp" /* OverlayAnalysisCsharp */,
+  go: "overlay_analysis_go" /* OverlayAnalysisGo */,
+  java: "overlay_analysis_java" /* OverlayAnalysisJava */,
+  javascript: "overlay_analysis_javascript" /* OverlayAnalysisJavascript */,
+  python: "overlay_analysis_python" /* OverlayAnalysisPython */,
+  ruby: "overlay_analysis_ruby" /* OverlayAnalysisRuby */,
+  rust: "overlay_analysis_rust" /* OverlayAnalysisRust */,
+  swift: "overlay_analysis_swift" /* OverlayAnalysisSwift */
+};
+var OVERLAY_ANALYSIS_CODE_SCANNING_FEATURES = {
+  actions: "overlay_analysis_code_scanning_actions" /* OverlayAnalysisCodeScanningActions */,
+  cpp: "overlay_analysis_code_scanning_cpp" /* OverlayAnalysisCodeScanningCpp */,
+  csharp: "overlay_analysis_code_scanning_csharp" /* OverlayAnalysisCodeScanningCsharp */,
+  go: "overlay_analysis_code_scanning_go" /* OverlayAnalysisCodeScanningGo */,
+  java: "overlay_analysis_code_scanning_java" /* OverlayAnalysisCodeScanningJava */,
+  javascript: "overlay_analysis_code_scanning_javascript" /* OverlayAnalysisCodeScanningJavascript */,
+  python: "overlay_analysis_code_scanning_python" /* OverlayAnalysisCodeScanningPython */,
+  ruby: "overlay_analysis_code_scanning_ruby" /* OverlayAnalysisCodeScanningRuby */,
+  rust: "overlay_analysis_code_scanning_rust" /* OverlayAnalysisCodeScanningRust */,
+  swift: "overlay_analysis_code_scanning_swift" /* OverlayAnalysisCodeScanningSwift */
+};
+var PACK_IDENTIFIER_PATTERN = (function() {
+  const alphaNumeric = "[a-z0-9]";
+  const alphaNumericDash = "[a-z0-9-]";
+  const component = `${alphaNumeric}(${alphaNumericDash}*${alphaNumeric})?`;
+  return new RegExp(`^${component}/${component}$`);
+})();
+function getPathToParsedConfigFile(tempDir) {
+  return path10.join(tempDir, "config");
+}
+async function getConfig(tempDir, logger) {
+  const configFile = getPathToParsedConfigFile(tempDir);
+  if (!fs8.existsSync(configFile)) {
+    return void 0;
+  }
+  const configString = fs8.readFileSync(configFile, "utf8");
+  logger.debug("Loaded config:");
+  logger.debug(configString);
+  const config = JSON.parse(configString);
+  if (config.version === void 0) {
+    throw new ConfigurationError(
+      `Loaded configuration file, but it does not contain the expected 'version' field.`
+    );
+  }
+  if (config.version !== getActionVersion()) {
+    throw new ConfigurationError(
+      `Loaded a configuration file for version '${config.version}', but running version '${getActionVersion()}'`
+    );
+  }
+  return config;
+}
+function appendExtraQueryExclusions(extraQueryExclusions, cliConfig) {
+  const augmentedConfig = cloneObject(cliConfig);
+  if (extraQueryExclusions.length === 0) {
+    return augmentedConfig;
+  }
+  augmentedConfig["query-filters"] = [
+    // Ordering matters. If the first filter is an inclusion, it implicitly
+    // excludes all queries that are not included. If it is an exclusion,
+    // it implicitly includes all queries that are not excluded. So user
+    // filters (if any) should always be first to preserve intent.
+    ...augmentedConfig["query-filters"] || [],
+    ...extraQueryExclusions
+  ];
+  if (augmentedConfig["query-filters"]?.length === 0) {
+    delete augmentedConfig["query-filters"];
+  }
+  return augmentedConfig;
+}
+
+// src/status-report.ts
 function isFirstPartyAnalysis(actionName) {
   if (actionName !== "upload-sarif" /* UploadSarif */) {
     return true;
@@ -89599,12 +89740,12 @@ function getActionsStatus(error2, otherFailureCause) {
 }
 function setJobStatusIfUnsuccessful(actionStatus) {
   if (actionStatus === "user-error") {
-    core8.exportVariable(
+    core9.exportVariable(
       "CODEQL_ACTION_JOB_STATUS" /* JOB_STATUS */,
       process.env["CODEQL_ACTION_JOB_STATUS" /* JOB_STATUS */] ?? "JOB_STATUS_CONFIGURATION_ERROR" /* ConfigErrorStatus */
     );
   } else if (actionStatus === "failure" || actionStatus === "aborted") {
-    core8.exportVariable(
+    core9.exportVariable(
       "CODEQL_ACTION_JOB_STATUS" /* JOB_STATUS */,
       process.env["CODEQL_ACTION_JOB_STATUS" /* JOB_STATUS */] ?? "JOB_STATUS_FAILURE" /* FailureStatus */
     );
@@ -89623,14 +89764,14 @@ async function createStatusReportBase(actionName, status, actionStartedAt, confi
     let workflowStartedAt = process.env["CODEQL_WORKFLOW_STARTED_AT" /* WORKFLOW_STARTED_AT */];
     if (workflowStartedAt === void 0) {
       workflowStartedAt = actionStartedAt.toISOString();
-      core8.exportVariable("CODEQL_WORKFLOW_STARTED_AT" /* WORKFLOW_STARTED_AT */, workflowStartedAt);
+      core9.exportVariable("CODEQL_WORKFLOW_STARTED_AT" /* WORKFLOW_STARTED_AT */, workflowStartedAt);
     }
     const runnerOs = getRequiredEnvParam("RUNNER_OS");
     const codeQlCliVersion = getCachedCodeQlVersion();
     const actionRef = process.env["GITHUB_ACTION_REF"] || "";
     const testingEnvironment = getTestingEnvironment();
     if (testingEnvironment) {
-      core8.exportVariable("CODEQL_ACTION_TESTING_ENVIRONMENT" /* TESTING_ENVIRONMENT */, testingEnvironment);
+      core9.exportVariable("CODEQL_ACTION_TESTING_ENVIRONMENT" /* TESTING_ENVIRONMENT */, testingEnvironment);
     }
     const isSteadyStateDefaultSetupRun = process.env["CODE_SCANNING_IS_STEADY_STATE_DEFAULT_SETUP"] === "true";
     const statusReport = {
@@ -89708,9 +89849,9 @@ var INCOMPATIBLE_MSG = "CodeQL Action version is incompatible with the code scan
 async function sendStatusReport(statusReport) {
   setJobStatusIfUnsuccessful(statusReport.status);
   const statusReportJSON = JSON.stringify(statusReport);
-  core8.debug(`Sending status report: ${statusReportJSON}`);
+  core9.debug(`Sending status report: ${statusReportJSON}`);
   if (isInTestMode()) {
-    core8.debug("In test mode. Status reports are not uploaded.");
+    core9.debug("In test mode. Status reports are not uploaded.");
     return;
   }
   const nwo = getRepositoryNwo();
@@ -89729,26 +89870,26 @@ async function sendStatusReport(statusReport) {
       switch (e.status) {
         case 403:
           if (getWorkflowEventName() === "push" && process.env["GITHUB_ACTOR"] === "dependabot[bot]") {
-            core8.warning(
+            core9.warning(
               `Workflows triggered by Dependabot on the "push" event run with read-only access. Uploading Code Scanning results requires write access. To use Code Scanning with Dependabot, please ensure you are using the "pull_request" event for this workflow and avoid triggering on the "push" event for Dependabot branches. See ${"https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning#scanning-on-push" /* SCANNING_ON_PUSH */} for more information on how to configure these events.`
             );
           } else {
-            core8.warning(e.message);
+            core9.warning(e.message);
           }
           return;
         case 404:
-          core8.warning(e.message);
+          core9.warning(e.message);
           return;
         case 422:
           if (getRequiredEnvParam("GITHUB_SERVER_URL") !== GITHUB_DOTCOM_URL) {
-            core8.debug(INCOMPATIBLE_MSG);
+            core9.debug(INCOMPATIBLE_MSG);
           } else {
-            core8.debug(OUT_OF_DATE_MSG);
+            core9.debug(OUT_OF_DATE_MSG);
           }
           return;
       }
     }
-    core8.warning(
+    core9.warning(
       `An unexpected error occurred when sending code scanning status report: ${getErrorMessage(
         e
       )}`
@@ -90007,145 +90148,6 @@ function wrapCliConfigurationError(cliError) {
   return new ConfigurationError(errorMessageBuilder);
 }
 
-// src/config-utils.ts
-var fs8 = __toESM(require("fs"));
-var path10 = __toESM(require("path"));
-var semver4 = __toESM(require_semver2());
-
-// src/analyses.ts
-var AnalysisKind = /* @__PURE__ */ ((AnalysisKind2) => {
-  AnalysisKind2["CodeScanning"] = "code-scanning";
-  AnalysisKind2["CodeQuality"] = "code-quality";
-  return AnalysisKind2;
-})(AnalysisKind || {});
-var supportedAnalysisKinds = new Set(Object.values(AnalysisKind));
-
-// src/caching-utils.ts
-var core9 = __toESM(require_core());
-
-// src/diff-informed-analysis-utils.ts
-var fs7 = __toESM(require("fs"));
-var path9 = __toESM(require("path"));
-function getDiffRangesJsonFilePath() {
-  return path9.join(getTemporaryDirectory(), "pr-diff-range.json");
-}
-function readDiffRangesJsonFile(logger) {
-  const jsonFilePath = getDiffRangesJsonFilePath();
-  if (!fs7.existsSync(jsonFilePath)) {
-    logger.debug(`Diff ranges JSON file does not exist at ${jsonFilePath}`);
-    return void 0;
-  }
-  const jsonContents = fs7.readFileSync(jsonFilePath, "utf8");
-  logger.debug(
-    `Read pr-diff-range JSON file from ${jsonFilePath}:
-${jsonContents}`
-  );
-  return JSON.parse(jsonContents);
-}
-
-// src/trap-caching.ts
-var actionsCache2 = __toESM(require_cache3());
-
-// src/config-utils.ts
-var defaultAugmentationProperties = {
-  queriesInputCombines: false,
-  packsInputCombines: false,
-  packsInput: void 0,
-  queriesInput: void 0,
-  extraQueryExclusions: [],
-  overlayDatabaseMode: "none" /* None */,
-  useOverlayDatabaseCaching: false
-};
-var OVERLAY_ANALYSIS_FEATURES = {
-  actions: "overlay_analysis_actions" /* OverlayAnalysisActions */,
-  cpp: "overlay_analysis_cpp" /* OverlayAnalysisCpp */,
-  csharp: "overlay_analysis_csharp" /* OverlayAnalysisCsharp */,
-  go: "overlay_analysis_go" /* OverlayAnalysisGo */,
-  java: "overlay_analysis_java" /* OverlayAnalysisJava */,
-  javascript: "overlay_analysis_javascript" /* OverlayAnalysisJavascript */,
-  python: "overlay_analysis_python" /* OverlayAnalysisPython */,
-  ruby: "overlay_analysis_ruby" /* OverlayAnalysisRuby */,
-  rust: "overlay_analysis_rust" /* OverlayAnalysisRust */,
-  swift: "overlay_analysis_swift" /* OverlayAnalysisSwift */
-};
-var OVERLAY_ANALYSIS_CODE_SCANNING_FEATURES = {
-  actions: "overlay_analysis_code_scanning_actions" /* OverlayAnalysisCodeScanningActions */,
-  cpp: "overlay_analysis_code_scanning_cpp" /* OverlayAnalysisCodeScanningCpp */,
-  csharp: "overlay_analysis_code_scanning_csharp" /* OverlayAnalysisCodeScanningCsharp */,
-  go: "overlay_analysis_code_scanning_go" /* OverlayAnalysisCodeScanningGo */,
-  java: "overlay_analysis_code_scanning_java" /* OverlayAnalysisCodeScanningJava */,
-  javascript: "overlay_analysis_code_scanning_javascript" /* OverlayAnalysisCodeScanningJavascript */,
-  python: "overlay_analysis_code_scanning_python" /* OverlayAnalysisCodeScanningPython */,
-  ruby: "overlay_analysis_code_scanning_ruby" /* OverlayAnalysisCodeScanningRuby */,
-  rust: "overlay_analysis_code_scanning_rust" /* OverlayAnalysisCodeScanningRust */,
-  swift: "overlay_analysis_code_scanning_swift" /* OverlayAnalysisCodeScanningSwift */
-};
-var PACK_IDENTIFIER_PATTERN = (function() {
-  const alphaNumeric = "[a-z0-9]";
-  const alphaNumericDash = "[a-z0-9-]";
-  const component = `${alphaNumeric}(${alphaNumericDash}*${alphaNumeric})?`;
-  return new RegExp(`^${component}/${component}$`);
-})();
-function getPathToParsedConfigFile(tempDir) {
-  return path10.join(tempDir, "config");
-}
-async function getConfig(tempDir, logger) {
-  const configFile = getPathToParsedConfigFile(tempDir);
-  if (!fs8.existsSync(configFile)) {
-    return void 0;
-  }
-  const configString = fs8.readFileSync(configFile, "utf8");
-  logger.debug("Loaded config:");
-  logger.debug(configString);
-  return JSON.parse(configString);
-}
-function generateCodeScanningConfig(originalUserInput, augmentationProperties) {
-  const augmentedConfig = cloneObject(originalUserInput);
-  if (augmentationProperties.queriesInput) {
-    if (augmentationProperties.queriesInputCombines) {
-      augmentedConfig.queries = (augmentedConfig.queries || []).concat(
-        augmentationProperties.queriesInput
-      );
-    } else {
-      augmentedConfig.queries = augmentationProperties.queriesInput;
-    }
-  }
-  if (augmentedConfig.queries?.length === 0) {
-    delete augmentedConfig.queries;
-  }
-  if (augmentationProperties.packsInput) {
-    if (augmentationProperties.packsInputCombines) {
-      if (Array.isArray(augmentedConfig.packs)) {
-        augmentedConfig.packs = (augmentedConfig.packs || []).concat(
-          augmentationProperties.packsInput
-        );
-      } else if (!augmentedConfig.packs) {
-        augmentedConfig.packs = augmentationProperties.packsInput;
-      } else {
-        const language = Object.keys(augmentedConfig.packs)[0];
-        augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(augmentationProperties.packsInput);
-      }
-    } else {
-      augmentedConfig.packs = augmentationProperties.packsInput;
-    }
-  }
-  if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-    delete augmentedConfig.packs;
-  }
-  augmentedConfig["query-filters"] = [
-    // Ordering matters. If the first filter is an inclusion, it implicitly
-    // excludes all queries that are not included. If it is an exclusion,
-    // it implicitly includes all queries that are not excluded. So user
-    // filters (if any) should always be first to preserve intent.
-    ...augmentedConfig["query-filters"] || [],
-    ...augmentationProperties.extraQueryExclusions
-  ];
-  if (augmentedConfig["query-filters"]?.length === 0) {
-    delete augmentedConfig["query-filters"];
-  }
-  return augmentedConfig;
-}
-
 // src/setup-codeql.ts
 var fs11 = __toESM(require("fs"));
 var path12 = __toESM(require("path"));
@@ -90153,7 +90155,7 @@ var toolcache3 = __toESM(require_tool_cache());
 var import_fast_deep_equal = __toESM(require_fast_deep_equal());
 var semver7 = __toESM(require_semver2());
 
-// node_modules/uuid/dist/esm/stringify.js
+// node_modules/uuid/dist/stringify.js
 var byteToHex = [];
 for (let i = 0; i < 256; ++i) {
   byteToHex.push((i + 256).toString(16).slice(1));
@@ -90162,27 +90164,24 @@ function unsafeStringify(arr, offset = 0) {
   return (byteToHex[arr[offset + 0]] + byteToHex[arr[offset + 1]] + byteToHex[arr[offset + 2]] + byteToHex[arr[offset + 3]] + "-" + byteToHex[arr[offset + 4]] + byteToHex[arr[offset + 5]] + "-" + byteToHex[arr[offset + 6]] + byteToHex[arr[offset + 7]] + "-" + byteToHex[arr[offset + 8]] + byteToHex[arr[offset + 9]] + "-" + byteToHex[arr[offset + 10]] + byteToHex[arr[offset + 11]] + byteToHex[arr[offset + 12]] + byteToHex[arr[offset + 13]] + byteToHex[arr[offset + 14]] + byteToHex[arr[offset + 15]]).toLowerCase();
 }
 
-// node_modules/uuid/dist/esm/rng.js
-var import_crypto = require("crypto");
+// node_modules/uuid/dist/rng.js
+var import_node_crypto = require("node:crypto");
 var rnds8Pool = new Uint8Array(256);
 var poolPtr = rnds8Pool.length;
 function rng() {
   if (poolPtr > rnds8Pool.length - 16) {
-    (0, import_crypto.randomFillSync)(rnds8Pool);
+    (0, import_node_crypto.randomFillSync)(rnds8Pool);
     poolPtr = 0;
   }
   return rnds8Pool.slice(poolPtr, poolPtr += 16);
 }
 
-// node_modules/uuid/dist/esm/native.js
-var import_crypto2 = require("crypto");
-var native_default = { randomUUID: import_crypto2.randomUUID };
+// node_modules/uuid/dist/native.js
+var import_node_crypto2 = require("node:crypto");
+var native_default = { randomUUID: import_node_crypto2.randomUUID };
 
-// node_modules/uuid/dist/esm/v4.js
-function v4(options, buf, offset) {
-  if (native_default.randomUUID && !buf && !options) {
-    return native_default.randomUUID();
-  }
+// node_modules/uuid/dist/v4.js
+function _v4(options, buf, offset) {
   options = options || {};
   const rnds = options.random ?? options.rng?.() ?? rng();
   if (rnds.length < 16) {
@@ -90202,6 +90201,12 @@ function v4(options, buf, offset) {
   }
   return unsafeStringify(rnds);
 }
+function v4(options, buf, offset) {
+  if (native_default.randomUUID && !buf && !options) {
+    return native_default.randomUUID();
+  }
+  return _v4(options, buf, offset);
+}
 var v4_default = v4;
 
 // src/tar.ts
@@ -91115,7 +91120,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         await this.getVersion(),
         "forceOverwrite" /* ForceOverwrite */
       ) ? "--force-overwrite" : "--overwrite";
-      const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+      const overlayDatabaseMode = config.overlayDatabaseMode;
       if (overlayDatabaseMode === "overlay" /* Overlay */) {
         const overlayChangesFile = await writeOverlayChangesFile(
           config,
@@ -91226,13 +91231,16 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         );
       }
     },
-    async betterResolveLanguages() {
+    async betterResolveLanguages({
+      filterToLanguagesWithQueries
+    } = { filterToLanguagesWithQueries: false }) {
       const codeqlArgs = [
         "resolve",
         "languages",
         "--format=betterjson",
         "--extractor-options-verbosity=4",
         "--extractor-include-aliases",
+        ...filterToLanguagesWithQueries ? ["--filter-to-languages-with-queries"] : [],
         ...getExtraOptionsFromEnv(["resolve", "languages"])
       ];
       const output = await runCli(cmd, codeqlArgs);
@@ -91271,7 +91279,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
@@ -91529,9 +91536,9 @@ async function runCli(cmd, args = [], opts = {}) {
 }
 async function writeCodeScanningConfigFile(config, logger) {
   const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-  const augmentedConfig = generateCodeScanningConfig(
-    config.originalUserInput,
-    config.augmentationProperties
+  const augmentedConfig = appendExtraQueryExclusions(
+    config.extraQueryExclusions,
+    config.computedConfig
   );
   logger.info(
     `Writing augmented user configuration file to ${codeScanningConfigFile}`
@@ -92899,7 +92906,7 @@ async function combineSarifFilesUsingCLI(sarifFiles, gitHubVersion, features, lo
   return JSON.parse(fs14.readFileSync(outputFile, "utf8"));
 }
 function populateRunAutomationDetails(sarif, category, analysis_key, environment) {
-  const automationID = getAutomationID(category, analysis_key, environment);
+  const automationID = getAutomationID2(category, analysis_key, environment);
   if (automationID !== void 0) {
     for (const run2 of sarif.runs || []) {
       if (run2.automationDetails === void 0) {
@@ -92912,7 +92919,7 @@ function populateRunAutomationDetails(sarif, category, analysis_key, environment
   }
   return sarif;
 }
-function getAutomationID(category, analysis_key, environment) {
+function getAutomationID2(category, analysis_key, environment) {
   if (category !== void 0) {
     let automationID = category;
     if (!automationID.endsWith("/")) {
@@ -93090,18 +93097,6 @@ function buildPayload(commitOid, ref, analysisKey, analysisName, zippedSarif, wo
   }
   return payloadObj;
 }
-var CodeScanningTarget = {
-  name: "code scanning",
-  target: "PUT /repos/:owner/:repo/code-scanning/analysis" /* CODE_SCANNING */,
-  sarifPredicate: (name) => name.endsWith(".sarif") && !CodeQualityTarget.sarifPredicate(name),
-  sentinelPrefix: "CODEQL_UPLOAD_SARIF_"
-};
-var CodeQualityTarget = {
-  name: "code quality",
-  target: "PUT /repos/:owner/:repo/code-quality/analysis" /* CODE_QUALITY */,
-  sarifPredicate: (name) => name.endsWith(".quality.sarif"),
-  sentinelPrefix: "CODEQL_UPLOAD_QUALITY_SARIF_"
-};
 async function uploadFiles(inputSarifPath, checkoutPath, category, features, logger, uploadTarget) {
   const sarifPaths = getSarifFilePaths(
     inputSarifPath,
@@ -93116,7 +93111,7 @@ async function uploadFiles(inputSarifPath, checkoutPath, category, features, log
     uploadTarget
   );
 }
-async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features, logger, uploadTarget = CodeScanningTarget) {
+async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features, logger, uploadTarget) {
   logger.startGroup(`Uploading ${uploadTarget.name} results`);
   logger.info(`Processing sarif files: ${JSON.stringify(sarifPaths)}`);
   const gitHubVersion = await getGitHubVersion();
@@ -93153,6 +93148,10 @@ async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features
   validateUniqueCategory(sarif, uploadTarget.sentinelPrefix);
   logger.debug(`Serializing SARIF for upload`);
   const sarifPayload = JSON.stringify(sarif);
+  const dumpDir = process.env["CODEQL_ACTION_SARIF_DUMP_DIR" /* SARIF_DUMP_DIR */];
+  if (dumpDir) {
+    dumpSarifFile(sarifPayload, dumpDir, logger, uploadTarget);
+  }
   logger.debug(`Compressing serialized SARIF`);
   const zippedSarif = import_zlib.default.gzipSync(sarifPayload).toString("base64");
   const checkoutURI = url.pathToFileURL(checkoutPath).href;
@@ -93191,6 +93190,21 @@ async function uploadSpecifiedFiles(sarifPaths, checkoutPath, category, features
     sarifID
   };
 }
+function dumpSarifFile(sarifPayload, outputDir, logger, uploadTarget) {
+  if (!fs14.existsSync(outputDir)) {
+    fs14.mkdirSync(outputDir, { recursive: true });
+  } else if (!fs14.lstatSync(outputDir).isDirectory()) {
+    throw new ConfigurationError(
+      `The path specified by the ${"CODEQL_ACTION_SARIF_DUMP_DIR" /* SARIF_DUMP_DIR */} environment variable exists and is not a directory: ${outputDir}`
+    );
+  }
+  const outputFile = path15.resolve(
+    outputDir,
+    `upload${uploadTarget.sarifExtension}`
+  );
+  logger.info(`Dumping processed SARIF file to ${outputFile}`);
+  fs14.writeFileSync(outputFile, sarifPayload);
+}
 var STATUS_CHECK_FREQUENCY_MILLISECONDS = 5 * 1e3;
 var STATUS_CHECK_TIMEOUT_MILLISECONDS = 2 * 60 * 1e3;
 async function waitForProcessing(repositoryNwo, sarifID, logger, options = {
@@ -93287,7 +93301,7 @@ function handleProcessingResultForUnsuccessfulExecution(response, status, logger
     assertNever(status);
   }
 }
-function validateUniqueCategory(sarif, sentinelPrefix = CodeScanningTarget.sentinelPrefix) {
+function validateUniqueCategory(sarif, sentinelPrefix) {
   const categories = {};
   for (const run2 of sarif.runs) {
     const id = run2?.automationDetails?.id;
@@ -93396,13 +93410,13 @@ async function run() {
       category,
       features,
       logger,
-      CodeScanningTarget
+      CodeScanning
     );
     core13.setOutput("sarif-id", uploadResult.sarifID);
     if (fs15.lstatSync(sarifPath).isDirectory()) {
       const qualitySarifFiles = findSarifFilesInDir(
         sarifPath,
-        CodeQualityTarget.sarifPredicate
+        CodeQuality.sarifPredicate
       );
       if (qualitySarifFiles.length !== 0) {
         await uploadSpecifiedFiles(
@@ -93411,7 +93425,7 @@ async function run() {
           fixCodeQualityCategory(logger, category),
           features,
           logger,
-          CodeQualityTarget
+          CodeQuality
         );
       }
     }

package-lock.json

@@ -1,12 +1,12 @@
 {
   "name": "codeql",
-  "version": "3.30.1",
+  "version": "3.30.4",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "codeql",
-      "version": "3.30.1",
+      "version": "3.30.4",
       "license": "MIT",
       "dependencies": {
         "@actions/artifact": "^2.3.1",
@@ -34,26 +34,24 @@
         "node-forge": "^1.3.1",
         "octokit": "^5.0.3",
         "semver": "^7.7.2",
-        "uuid": "^11.1.0"
+        "uuid": "^12.0.0"
       },
       "devDependencies": {
         "@ava/typescript": "6.0.0",
         "@eslint/compat": "^1.3.2",
         "@eslint/eslintrc": "^3.3.1",
-        "@eslint/js": "^9.34.0",
+        "@eslint/js": "^9.35.0",
         "@microsoft/eslint-formatter-sarif": "^3.1.0",
         "@octokit/types": "^14.1.0",
         "@types/archiver": "^6.0.3",
         "@types/console-log-level": "^1.4.5",
         "@types/follow-redirects": "^1.14.4",
-        "@types/get-folder-size": "^3.0.4",
         "@types/js-yaml": "^4.0.9",
         "@types/node": "20.19.9",
         "@types/node-forge": "^1.3.14",
-        "@types/semver": "^7.7.0",
+        "@types/semver": "^7.7.1",
         "@types/sinon": "^17.0.4",
-        "@types/uuid": "^10.0.0",
-        "@typescript-eslint/eslint-plugin": "^8.41.0",
+        "@typescript-eslint/eslint-plugin": "^8.43.0",
         "@typescript-eslint/parser": "^8.41.0",
         "ava": "^6.4.1",
         "esbuild": "^0.25.9",
@@ -1332,9 +1330,9 @@
       }
     },
     "node_modules/@eslint/js": {
-      "version": "9.34.0",
-      "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.34.0.tgz",
-      "integrity": "sha512-EoyvqQnBNsV1CWaEJ559rxXL4c8V92gxirbawSmVUOWXlsRxxQXl6LmCpdUblgxgSkDIqKnhzba2SjRTI/A5Rw==",
+      "version": "9.35.0",
+      "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.35.0.tgz",
+      "integrity": "sha512-30iXE9whjlILfWobBkNerJo+TXYsgVM5ERQwMcMKCHckHflCmf7wXDAHlARoWnh0s1U72WqlbeyE7iAcCzuCPw==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -2459,16 +2457,6 @@
         "@types/node": "*"
       }
     },
-    "node_modules/@types/get-folder-size": {
-      "version": "3.0.4",
-      "resolved": "https://registry.npmjs.org/@types/get-folder-size/-/get-folder-size-3.0.4.tgz",
-      "integrity": "sha512-tSf/k7Undx6jKRwpChR9tl+0ZPf0BVwkjBRtJ5qSnz6iWm2ZRYMAS2MktC2u7YaTAFHmxpL/LBxI85M7ioJCSg==",
-      "dev": true,
-      "license": "MIT",
-      "dependencies": {
-        "@types/node": "*"
-      }
-    },
     "node_modules/@types/js-yaml": {
       "version": "4.0.9",
       "dev": true,
@@ -2510,10 +2498,11 @@
       }
     },
     "node_modules/@types/semver": {
-      "version": "7.7.0",
-      "resolved": "https://registry.npmjs.org/@types/semver/-/semver-7.7.0.tgz",
-      "integrity": "sha512-k107IF4+Xr7UHjwDc7Cfd6PRQfbdkiRabXGRjo07b4WyPahFBZCZ1sE+BNxYIJPPg73UkfOsVOLwqVc/6ETrIA==",
-      "dev": true
+      "version": "7.7.1",
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+      "version": "8.43.0",
+      "resolved": "https://registry.npmjs.org/@typescript-eslint/typescript-estree/-/typescript-estree-8.43.0.tgz",
+      "integrity": "sha512-7Vv6zlAhPb+cvEpP06WXXy/ZByph9iL6BQRBDj4kmBsW98AqEeQHlj/13X+sZOrKSo9/rNKH4Ul4f6EICREFdw==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@typescript-eslint/project-service": "8.41.0",
-        "@typescript-eslint/tsconfig-utils": "8.41.0",
-        "@typescript-eslint/types": "8.41.0",
-        "@typescript-eslint/visitor-keys": "8.41.0",
+        "@typescript-eslint/project-service": "8.43.0",
+        "@typescript-eslint/tsconfig-utils": "8.43.0",
+        "@typescript-eslint/types": "8.43.0",
+        "@typescript-eslint/visitor-keys": "8.43.0",
         "debug": "^4.3.4",
         "fast-glob": "^3.3.2",
         "is-glob": "^4.0.3",
@@ -3043,16 +3027,16 @@
       }
     },
     "node_modules/@typescript-eslint/type-utils/node_modules/@typescript-eslint/utils": {
-      "version": "8.41.0",
-      "resolved": "https://registry.npmjs.org/@typescript-eslint/utils/-/utils-8.41.0.tgz",
-      "integrity": "sha512-udbCVstxZ5jiPIXrdH+BZWnPatjlYwJuJkDA4Tbo3WyYLh8NvB+h/bKeSZHDOFKfphsZYJQqaFtLeXEqurQn1A==",
+      "version": "8.43.0",
+      "resolved": "https://registry.npmjs.org/@typescript-eslint/utils/-/utils-8.43.0.tgz",
+      "integrity": "sha512-S1/tEmkUeeswxd0GGcnwuVQPFWo8NzZTOMxCvw8BX7OMxnNae+i8Tm7REQen/SwUIPoPqfKn7EaZ+YLpiB3k9g==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
         "@eslint-community/eslint-utils": "^4.7.0",
-        "@typescript-eslint/scope-manager": "8.41.0",
-        "@typescript-eslint/types": "8.41.0",
-        "@typescript-eslint/typescript-estree": "8.41.0"
+        "@typescript-eslint/scope-manager": "8.43.0",
+        "@typescript-eslint/types": "8.43.0",
+        "@typescript-eslint/typescript-estree": "8.43.0"
       },
       "engines": {
         "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
@@ -3067,13 +3051,13 @@
       }
     },
     "node_modules/@typescript-eslint/type-utils/node_modules/@typescript-eslint/visitor-keys": {
-      "version": "8.41.0",
-      "resolved": "https://registry.npmjs.org/@typescript-eslint/visitor-keys/-/visitor-keys-8.41.0.tgz",
-      "integrity": "sha512-+GeGMebMCy0elMNg67LRNoVnUFPIm37iu5CmHESVx56/9Jsfdpsvbv605DQ81Pi/x11IdKUsS5nzgTYbCQU9fg==",
+      "version": "8.43.0",
+      "resolved": "https://registry.npmjs.org/@typescript-eslint/visitor-keys/-/visitor-keys-8.43.0.tgz",
+      "integrity": "sha512-T+S1KqRD4sg/bHfLwrpF/K3gQLBM1n7Rp7OjjikjTEssI2YJzQpi5WXoynOaQ93ERIuq3O8RBTOUYDKszUCEHw==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@typescript-eslint/types": "8.41.0",
+        "@typescript-eslint/types": "8.43.0",
         "eslint-visitor-keys": "^4.2.1"
       },
       "engines": {
@@ -3180,9 +3164,9 @@
       }
     },
     "node_modules/@typescript-eslint/typescript-estree/node_modules/brace-expansion": {
-      "version": "2.0.1",
-      "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.1.tgz",
-      "integrity": "sha512-XnAIvQ8eM+kC6aULx6wuQiwVsnzsi9d3WxzV3FpWTGA19F621kwdbsAcFKXgKUHZWsy+mY6iL1sHTxWEFCytDA==",
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.2.tgz",
+      "integrity": "sha512-Jt0vHyM+jmUBqojB7E1NIYadt0vI0Qxjxd2TErW94wDz+E2LAm5vKMXXwg6ZZBTHPuUlDgQHKXvjGBdfcF1ZDQ==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -7808,9 +7792,9 @@
       }
     },
     "node_modules/readdir-glob/node_modules/brace-expansion": {
-      "version": "2.0.1",
-      "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.1.tgz",
-      "integrity": "sha512-XnAIvQ8eM+kC6aULx6wuQiwVsnzsi9d3WxzV3FpWTGA19F621kwdbsAcFKXgKUHZWsy+mY6iL1sHTxWEFCytDA==",
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.2.tgz",
+      "integrity": "sha512-Jt0vHyM+jmUBqojB7E1NIYadt0vI0Qxjxd2TErW94wDz+E2LAm5vKMXXwg6ZZBTHPuUlDgQHKXvjGBdfcF1ZDQ==",
       "license": "MIT",
       "dependencies": {
         "balanced-match": "^1.0.0"
@@ -9092,16 +9076,16 @@
       "license": "MIT"
     },
     "node_modules/uuid": {
-      "version": "11.1.0",
-      "resolved": "https://registry.npmjs.org/uuid/-/uuid-11.1.0.tgz",
-      "integrity": "sha512-0/A9rDy9P7cJ+8w1c9WD9V//9Wj15Ce2MPz8Ri6032usz+NfePxx5AcN3bN+r6ZL6jEo066/yNYB3tn4pQEx+A==",
+      "version": "12.0.0",
+      "resolved": "https://registry.npmjs.org/uuid/-/uuid-12.0.0.tgz",
+      "integrity": "sha512-USe1zesMYh4fjCA8ZH5+X5WIVD0J4V1Jksm1bFTVBX2F/cwSXt0RO5w/3UXbdLKmZX65MiWV+hwhSS8p6oBTGA==",
       "funding": [
         "https://github.com/sponsors/broofa",
         "https://github.com/sponsors/ctavan"
       ],
       "license": "MIT",
       "bin": {
-        "uuid": "dist/esm/bin/uuid"
+        "uuid": "dist/bin/uuid"
       }
     },
     "node_modules/webidl-conversions": {

package.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql",
-  "version": "3.30.1",
+  "version": "3.30.4",
   "private": true,
   "description": "CodeQL action",
   "scripts": {
@@ -48,26 +48,24 @@
     "node-forge": "^1.3.1",
     "octokit": "^5.0.3",
     "semver": "^7.7.2",
-    "uuid": "^11.1.0"
+    "uuid": "^12.0.0"
   },
   "devDependencies": {
     "@ava/typescript": "6.0.0",
     "@eslint/compat": "^1.3.2",
     "@eslint/eslintrc": "^3.3.1",
-    "@eslint/js": "^9.34.0",
+    "@eslint/js": "^9.35.0",
     "@microsoft/eslint-formatter-sarif": "^3.1.0",
     "@octokit/types": "^14.1.0",
     "@types/archiver": "^6.0.3",
     "@types/console-log-level": "^1.4.5",
     "@types/follow-redirects": "^1.14.4",
-    "@types/get-folder-size": "^3.0.4",
     "@types/js-yaml": "^4.0.9",
     "@types/node": "20.19.9",
     "@types/node-forge": "^1.3.14",
-    "@types/semver": "^7.7.0",
+    "@types/semver": "^7.7.1",
     "@types/sinon": "^17.0.4",
-    "@types/uuid": "^10.0.0",
-    "@typescript-eslint/eslint-plugin": "^8.41.0",
+    "@typescript-eslint/eslint-plugin": "^8.43.0",
     "@typescript-eslint/parser": "^8.41.0",
     "ava": "^6.4.1",
     "esbuild": "^0.25.9",
@@ -100,6 +98,7 @@
     },
     "eslint-plugin-jsx-a11y": {
       "semver": ">=6.3.1"
-    }
+    },
+    "brace-expansion@2.0.1": "2.0.2"
   }
 }

pr-checks/checks/all-platform-bundle.yml

@@ -12,6 +12,5 @@ steps:
       languages: cpp,csharp,go,java,javascript,python,ruby
       tools: ${{ steps.prepare-test.outputs.tools-url }}
   - name: Build code
-    shell: bash
     run: ./build.sh
   - uses: ./../action/analyze

pr-checks/checks/analyze-ref-input.yml

@@ -9,7 +9,6 @@ steps:
       languages: cpp,csharp,java,javascript,python
       config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
   - name: Build code
-    shell: bash
     run: ./build.sh
   - uses: ./../action/analyze
     with:

pr-checks/checks/autobuild-action.yml

@@ -17,7 +17,6 @@ steps:
       CORECLR_PROFILER_PATH_64: ""
   - uses: ./../action/analyze
   - name: Check database
-    shell: bash
     run: |
       cd "$RUNNER_TEMP/codeql_databases"
       if [[ ! -d csharp ]]; then

pr-checks/checks/autobuild-direct-tracing-with-working-dir.yml

@@ -10,7 +10,6 @@ env:
   CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
 steps:
   - name: Test setup
-    shell: bash
     run: |
       # Make sure that Gradle build succeeds in autobuild-dir ...
       cp -a ../action/tests/java-repo autobuild-dir
@@ -22,7 +21,6 @@ steps:
       languages: java
       tools: ${{ steps.prepare-test.outputs.tools-url }}
   - name: Check that indirect tracing is disabled
-    shell: bash
     run: |
       if [[ ! -z "${CODEQL_RUNNER}" ]]; then
         echo "Expected indirect tracing to be disabled, but the" \

pr-checks/checks/autobuild-direct-tracing.yml

@@ -7,7 +7,6 @@ env:
   CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
 steps:
   - name: Set up Java test repo configuration
-    shell: bash
     run: |
       mv * .github ../action/tests/multi-language-repo/
       mv ../action/tests/multi-language-repo/.github/workflows .github
@@ -22,7 +21,6 @@ steps:
       tools: ${{ steps.prepare-test.outputs.tools-url }}
 
   - name: Check that indirect tracing is disabled
-    shell: bash
     run: |
       if [[ ! -z "${CODEQL_RUNNER}" ]]; then
         echo "Expected indirect tracing to be disabled, but the" \

pr-checks/checks/build-mode-manual.yml

@@ -22,7 +22,6 @@ steps:
       fi
 
   - name: Build code
-    shell: bash
     run: ./build.sh
 
   - uses: ./../action/analyze

pr-checks/checks/cpp-deptrace-disabled.yml

@@ -6,7 +6,6 @@ env:
   DOTNET_GENERATE_ASPNET_CERTIFICATE: "false"
 steps:
   - name: Test setup
-    shell: bash
     run: |
       cp -a ../action/tests/cpp-autobuild autobuild-dir
   - uses: ./../action/init
@@ -18,8 +17,7 @@ steps:
       working-directory: autobuild-dir
     env:
       CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-  - shell: bash
-    run: |
+  - run: |
       if ls /usr/bin/errno; then
         echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
         exit 1

pr-checks/checks/cpp-deptrace-enabled-on-macos.yml

@@ -6,7 +6,6 @@ env:
   DOTNET_GENERATE_ASPNET_CERTIFICATE: "false"
 steps:
   - name: Test setup
-    shell: bash
     run: |
       cp -a ../action/tests/cpp-autobuild autobuild-dir
   - uses: ./../action/init
@@ -18,8 +17,7 @@ steps:
       working-directory: autobuild-dir
     env:
       CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-  - shell: bash
-    run: |
+  - run: |
       if ! ls /usr/bin/errno; then
         echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
       else

pr-checks/checks/cpp-deptrace-enabled.yml

@@ -6,7 +6,6 @@ env:
   DOTNET_GENERATE_ASPNET_CERTIFICATE: "false"
 steps:
   - name: Test setup
-    shell: bash
     run: |
       cp -a ../action/tests/cpp-autobuild autobuild-dir
   - uses: ./../action/init
@@ -18,8 +17,7 @@ steps:
       working-directory: autobuild-dir
     env:
       CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-  - shell: bash
-    run: |
+  - run: |
       if ! ls /usr/bin/errno; then
         echo "Did not autoinstall errno"
         exit 1

pr-checks/checks/diagnostics-export.yml

@@ -10,7 +10,6 @@ steps:
       languages: javascript
       tools: ${{ steps.prepare-test.outputs.tools-url }}
   - name: Add test diagnostics
-    shell: bash
     env:
       CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
     run: |